Hi Yealing

Thanks again. You are right, restricting the sequence range doesn¹t work in
the linear display. If you want to remove the track you can do this from the
ŒTrack Manager¹ using the ŒRemove¹ buttons on the right.


On 11/1/10 2:42 AM, "Yealing" <yealingt+arte...@gmail.com> wrote:

> Thanks, Tim, for the rapid reply.
> I've did exactly that, removing the tracks in artemis before launching
> DNAPlotter. But is there a way to ask DNAPlotter not to draw the line for the
> sequence without any tracks? What I previously meant was that I tried to use
> the DNA wizard to define start and stop positions. But it only seems to work
> in circular view and not linear view. E.g. When I have start set to 1000 and
> stop set to 2000, the circular view displays bases 1000 to 2000, but when I
> switch to linear view, it shows bases 1 to 2000.
> Sorry for asking a not-so-clear question before. Thanks again.
> Regards,
> -- yealing --
> On Fri, Oct 29, 2010 at 4:35 PM, Tim Carver <t...@sanger.ac.uk> wrote:
>> Hi Yealing
>> Thanks for the feedback.
>> One way to restrict the range on a track is to define it in Artemis first,
>> i.e. delete the features outside a range by first selecting the features in
>> the range (select base range and then select overlapping features) and toggle
>> the selection (under the Select menu). In that way you can temporarily delete
>> the features outside that range and save it to a new file. Or you can filter
>> by a list of gene names (see the first example in the manual
>> http://www.sanger.ac.uk/resources/software/dnaplotter/#t_3) in DNAPlotter.
>> Unfortunately there is no easy way round the arrow head problem but I will
>> try and get time to look at that.
>> Regards
>> Tim
>> On 10/29/10 1:53 AM, "Yealing" <yealingt+arte...@gmail.com
>> <mailto:yealingt%2barte...@gmail.com> > wrote:
>>> Hello Tim
>>> I've had an experience with the DNA plotter where when I select to view only
>>> a certain range of the DNA sequence, it only works on the "end" range but
>>> not the "begin" range. For example, I have a 10kb DNA sequence and I'm
>>> interested to plot features on 5kb-6kb. However, when I set the range at the
>>> tracks, it plots from 1bp to 6kb. It works when I only set the "begin"
>>> range, where if I only enter 5000 at begin and nothing for end, it will
>>> display tracks from 5kb to 10kb. I wonder if anybody else is having that
>>> problem or if it's just me.
>>> Also, is there a way to automatically draw the arrow heads according to the
>>> directions that we a;ready specify from artemis? When we have a lot of
>>> features, it's troublesome to have to go check the direction for each of
>>> them and manually pick arrow head or arrow tail.
>>> Apologies if the answers can be found in the manual, but since Kajsa was
>>> just inquiring about the DNA plotter, I thought I might as well.
>>> Thanks and best regards,
>>> -- yealing --
>>> On Thu, Oct 28, 2010 at 11:20 PM, Tim Carver <t...@sanger.ac.uk> wrote:
>>>> Hi Kajsa The best way to avoid that is to set up the tracks first. The
>>>> track manager works by filtering the features to display and will refresh
>>>> them when you click UPDATE. So you should ideally do your editing after you
>>>> have set the tracks. Regards On 10/28/10 3:59 PM, "Kajsa Himmelstrand"
>>>> <kajsa.himmelstr...@mykopat.slu.se> wrote: > Hello, > I have a question
>>>> about the DNAplotter to MacOSX that I got with Artemis v12. > The program
>>>> doesn't seem to work so well. For example, when I do things in the > Track
>>>> Manager, things that I have previously edited disappears. Do you have > any
>>>> better upgraded version without the bugs? It would otherwise be a very >
>>>> good tool for me to use. In other case, is there any other similar program
>>>> to > use while DNAplotter is being upgraded? > Best regards from Kajsa
>>>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Kajsa Himmelstrand, PhD
>>>> Student      > Swedish University of Agricultural Sciences > Department of
>>>> Forest Mycology and Pathology >
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>> --  The Wellcome Trust Sanger Institute is operated by Genome Research
>> Limited, a charity registered in England with number 1021457 and a  company
>> registered in England with number 2742969, whose registered  office is 215
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