Great to hear it is working well. Unfortunately there isn't a way of (at the
moment) configuring it to that extent.
On 11/12/10 12:11 AM, "Gowthaman Ramasamy"
> Hi Tim,
> This works like a charm. But, that makes me want more. Sorry about that.
> - Is there a way we can set the default bam view option to "Coverage Plot
> colors" ? So that we see pile up of reads. Or via command line option?
> I know i'm asking for too much here........
> Thanks very much,
>>> ./art -Doffset=12500 -Dbam=/path/file.bam ~/foo.embl + ~/foo.gff
>> This is excellent!
>> Will we be able to do the same for .userplot files soon?
>> % ./art -Doffset=12500 -Dbam=/path/file.bam -Dplot=foo.userplot
>> ~/foo.embl + ~/foo.gff
>> % ./art -Doffset=12500 -Dbam=/path/file.bam ~/foo.embl + ~/foo.gff @
>> --Torsten Seemann
>> --Victorian Bioinformatics Consortium, Dept. Microbiology, Monash
>> University, AUSTRALIA
> The Wellcome Trust Sanger Institute is operated by Genome Research
> Limited, a charity registered in England with number 1021457 and a
> company registered in England with number 2742969, whose registered
> office is 215 Euston Road, London, NW1 2BE.
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