I'd like to launch DnaPlotter with a sequence file name. Best I can tell by looking at main() in uk.ac.sanger.artemis.circular.DNADraw, DnaPlotter either reads a template file (indicated by using "-t") or launches a wizard, allowing navigation to a sequence file or template. I'm looking for a "-f" kind of option, where I can indicate the EMBL or GenBank file I want to display.
An alternate, two-step approach would be to create a template from the sequence file automatically, e.g., some sort of command-line converter (no user interaction like browsing), and then launch with that template. I checked the mailing list archives but didn't see anything germane. Apologies in advance if I'm missing something obvious. Scott Scott Markel, Ph.D. Principal Bioinformatics Architect email: smar...@accelrys.com Accelrys (Pipeline Pilot R&D) mobile: +1 858 205 3653 10188 Telesis Court, Suite 100 voice: +1 858 799 5603 San Diego, CA 92121 fax: +1 858 799 5222 USA web: http://www.accelrys.com http://www.linkedin.com/in/smarkel Secretary, Board of Directors: International Society for Computational Biology Chair: ISCB Publications Committee Associate Editor: PLoS Computational Biology Editorial Board: Briefings in Bioinformatics _______________________________________________ Artemis-users mailing list Artemisfirstname.lastname@example.org http://lists.sanger.ac.uk/mailman/listinfo/artemis-users