Hi All I've switched over to using GFF3 some time ago simply because it's the preferred file format for most software. Since then, I've been having some problem in artemis. I've tried to dig, but maybe because I have not digged deep enough... Please, anyone, if you can help.
During annotation, I write GFF3 files according to the guide on http://www.sequenceontology.org/gff3.shtml. However, because there isn't an artemis GFF validator, valid GFF3 files still have problems in artemis. The Parent tag is supposed to be able to group exons into transcripts (mRNA?) and transcripts into genes. However, the features with identical Parent tags are not linked in artemis. Why is this so? I also have problems with features I mark as mRNAs. When I load the GFF files in artemis, in most cases the mRNA are greyed out in the feature list. I rana search and found in one of the artemis paper that this means the feature is "hidden". But I could not find a switch to "unhide" it. When I generate new mRNA feature in artemis, it is not hidden by default. Can I change this? If not, can I at least unhide it individually? Thank you! Yealing. _______________________________________________ Artemis-users mailing list Artemisfirstname.lastname@example.org http://lists.sanger.ac.uk/mailman/listinfo/artemis-users