For the user defined plots in DNAPlotter, they need to have one line per
base and one column of integer or floating point values per line. The number
of lines should match the number of bases in the sequence. For example:
This is then loaded from the 'Graph'->'User' menu.
On 11/7/11 9:40 PM, "Lena Koenig" <koe...@microbial-ecology.net> wrote:
> Hi all,
> I would like to visualize the mapped reads of an Illumina RNA-seq
> experiment with DNAPlotter, as done in Perkins et al., 2009 (for
> Salmonella), but I cannot figure out how to create a transcriptome plot.
> What type of input file is needed in addition to an annotation file and
> how to load it?
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