I trying to trick ACT to display linking bars from two different blast out
I have a chromosome at one side and newly scaffolded chromosome on the other
side (generated by ordering of contigs using Abacas). I want to display two
kinds of link between them.
1. crunch file from Abacas. To show matching/ordered contigs. So there will
be only few super wide bars.
2. tblastx outfile between these chromosomes (used MSPcrunch to match with
Abacas outfile output)
I manually fuse both the files and use in ACT. It display links from both. But,
I want to make abacas crunch disappear most of the time.
My naïve attempt was to change score in the Abacas crunch file to"zero"
artificially, so that I can block that link using the ACT 's middle window
scroll bar. But, it does not respond. I mean, it does not control the display
based on score.
But, when I load un modified blastout file (with -m 9) option, it seems to
control the display. Is it something a known issue.
Better, yet, is there any better way to use two different crunch/blast out
PS: I can load one chromosome twice. But, anything else?
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