Hi Everyone, I trying to trick ACT to display linking bars from two different blast out files.
I have a chromosome at one side and newly scaffolded chromosome on the other side (generated by ordering of contigs using Abacas). I want to display two kinds of link between them. 1. crunch file from Abacas. To show matching/ordered contigs. So there will be only few super wide bars. 2. tblastx outfile between these chromosomes (used MSPcrunch to match with Abacas outfile output) I manually fuse both the files and use in ACT. It display links from both. But, I want to make abacas crunch disappear most of the time. My naïve attempt was to change score in the Abacas crunch file to"zero" artificially, so that I can block that link using the ACT 's middle window scroll bar. But, it does not respond. I mean, it does not control the display based on score. But, when I load un modified blastout file (with -m 9) option, it seems to control the display. Is it something a known issue. Better, yet, is there any better way to use two different crunch/blast out files? Gowthaman PS: I can load one chromosome twice. But, anything else? _______________________________________________ Artemis-users mailing list Artemisfirstname.lastname@example.org http://lists.sanger.ac.uk/mailman/listinfo/artemis-users