I would like to be able to serve up genomes with BAM files as shown in 
http://www.sanger.ac.uk/resources/software/artemis/ngs/. It is very handy for 
our end-users to be able to visualize the a NGS alignments in a familiar tool.

Is there a how to  set up artemis with Webstart  and bam files loaded per 
genome- how do you get from my genome file and the correspond .bam and .bai to 
the jlnp file that is needed by the web start.

- its probably obvious but I am new to web-start and would appreciate any help.

The server is running Ubuntu with Apache as the web server. It is set up with 
the right mime types for Java Webstart.

Thank you

Best Regards
Preethi Ramaiya

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