I have started using Artemis a few weeks ago. What I want to do is
comparing BAM files from different samples.
As I use the graphical interface it is really nice to look at the files
all at once with the settings: Show - Single Reads; View - Coverage Heat
But I would like to know how this graph is generated and if I could
actually extract the matrix somewhere which is behind the graph.
I also would like to understand what exactly is happening in the graph
when I change the setting Read Coverage threshold.
I'm glad about any help and explanations!
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