Hi,
I want to use Mauve for a multiple alignment of several genomes. I saved the
chromsomes in genbank format in Artemis. The alignment works fine in Mauve but
it can't show the annotations.
Comparing a genbank file from NCBI and the ones generated by Artemis I can see
many differences but I don't know what is missing and should be changed.
Is there an option to save as "strict genbank" in Artemis?
Anyone who could help me out?
I've attached part of one of my genomes in genbank format.
Best regards,
Astrid von Mentzer
fasta_record 1..4886109
/note="E925|SC|contig000003"
/label=E925|SC|contig000003
/colour=10
/ID=E925|SC|contig000003
CDS 291..752
/ID=E925_00088
/locus_tag="E925_00088"
/inference=ab initio prediction:Prodigal:2.60,similar to
AA sequence:RefSeq:YP_006094669.1,similar to AA
sequence:UniProtKB:P16171,protein
motif:CLUSTERS:PRK08010,protein
motif:TIGRFAMs:TIGR01350,protein motif:Pfam:PF07992.8
/eC_number=1.16.1.1
/product="putative pyridine nucleotide-disulfide
oxidoreductase,Mercuric reductase,pyridine
nucleotide-disulfide oxidoreductase,dihydrolipoyl
dehydrogenase,Pyridine nucleotide-disulphide
oxidoreductase"
/protein_id="gnl|SC|E925_00088"
/gene="merA_1"
/codon_start=1
CDS 815..1291
/ID=E925_00089
/locus_tag="E925_00089"
/inference=ab initio prediction:Prodigal:2.60,similar to
AA sequence:RefSeq:YP_006094669.1,similar to AA
sequence:UniProtKB:P00392,protein
motif:CLUSTERS:PRK08010,protein motif:Cdd:COG2210,protein
motif:TIGRFAMs:TIGR02053,protein motif:Pfam:PF00070.21
/eC_number=1.16.1.1
/product="putative pyridine nucleotide-disulfide
oxidoreductase,Mercuric reductase,pyridine
nucleotide-disulfide oxidoreductase,Uncharacterized
conserved protein,mercuric reductase,Pyridine
nucleotide-disulphide oxidoreductase"
/protein_id="gnl|SC|E925_00089"
/gene="merA_2"
/codon_start=1
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