Hi,Jana,
I used both units of kg/m3 and kg/kg,but get the same error of

Run-time error in controlfile: my_2-2-3_liquid.arts
Run-time error in method: abs_lookupSetupBatch
I don't know whether this tag uses h2o_abs or not.
Cannot set abs_nls automatically.
Stopping ARTS execution.
Goodbye.

I have confuse if there is the problem of others.

Huang Yingzhu

> -----原始邮件-----
> 发件人: [email protected]
> 发送时间: 2015年6月30日 星期二
> 收件人: [email protected]
> 抄送: 
> 主题: arts-users Digest, Vol 74, Issue 21
> 
> Send arts-users mailing list submissions to
>  [email protected]
> 
> To subscribe or unsubscribe via the World Wide Web, visit
>  https://www.sat.ltu.se/mailman/listinfo/arts-users
> or, via email, send a message with subject or body 'help' to
>  [email protected]
> 
> You can reach the person managing the list at
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> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of arts-users digest..."
> 
> 
> Today's Topics:
> 
>    1. Re: arts-users Digest, Vol 74, Issue 19 (???)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Tue, 30 Jun 2015 17:27:54 +0800 (GMT+08:00)
> From: ??? <[email protected]>
> Subject: Re: [arts-users] arts-users Digest, Vol 74, Issue 19
> To: [email protected]
> Message-ID:
>  <[email protected]>
> Content-Type: text/plain; charset="gbk"
> 
> Hi,Jana,
> this is my controflie as attached,and the running error is attached.
> 
>  Run-time error in controlfile: my_2-2-3_liquid.arts
> Run-time error in method: abs_lookupSetupBatch
> I don't know whether this tag uses h2o_abs or not.
> Cannot set abs_nls automatically.
> Stopping ARTS execution.
> Goodbye.
> 
> Thanks
> 
> Huang Yingzhu
> 
> > -----????-----
> > ???: [email protected]
> > ????: 2015?6?30? ???
> > ???: [email protected]
> > ??: 
> > ??: arts-users Digest, Vol 74, Issue 19
> > 
> > Send arts-users mailing list submissions to
> >  [email protected]
> > 
> > To subscribe or unsubscribe via the World Wide Web, visit
> >  https://www.sat.ltu.se/mailman/listinfo/arts-users
> > or, via email, send a message with subject or body 'help' to
> >  [email protected]
> > 
> > You can reach the person managing the list at
> >  [email protected]
> > 
> > When replying, please edit your Subject line so it is more specific
> > than "Re: Contents of arts-users digest..."
> > 
> > 
> > Today's Topics:
> > 
> >    1. Re: arts-users Digest, Vol 74, Issue 18 (???)
> > 
> > 
> > ----------------------------------------------------------------------
> > 
> > Message: 1
> > Date: Tue, 30 Jun 2015 16:39:43 +0800 (GMT+08:00)
> > From: ??? <[email protected]>
> > Subject: Re: [arts-users] arts-users Digest, Vol 74, Issue 18
> > To: [email protected]
> > Message-ID:
> >  <[email protected]>
> > Content-Type: text/plain; charset="gbk"
> > 
> > Hi,Jana,
> > As your option 1,is that I set as follows?
> > 
> > batch_atm_fields_compactFromArrayOfMatrix(
> >    batch_atm_fields_compact,
> >    atmosphere_dim,
> >    arrayofmatrix_1,
> > ["T", "z", "liquidcloud-MPM93","icecloud-MPM93", 
> > "abs_species-H2O","abs_species-O3"],
> >            ["abs_species-O2", "abs_species-N2"],
> >            [0.2095, 0.7808]
> >     )
> > # WriteXML("output_file_format", batch_atm_fields_compact_all)
> >  
> > Delete( arrayofmatrix_1 )
> > # Definition of species
> > abs_speciesSet( species=[ 
> >             "liquidcloud-MPM93",
> >             "icecloud-MPM93",
> >             "H2O-PWR98",
> >                           "O3",
> >                           "O2-PWR93",
> >                           "N2-SelfContStandardType" 
> >                
> >                 ] )
> > but I got the error massage too,
> > Run-time error in method: abs_lookupSetupBatch
> > No field for absorption species 'liquidcloud'found.
> > No field for absorption species 'icecloud'found.
> > Your field names are:
> >   T   z liquidcloud-MPM93 icecloud-MPM93 abs_species-H2O abs_species-O3 
> > abs_species-O2 abs_species-N2
> > Stopping ARTS execution.
> > Goodbye.
> > 
> > What happened?
> > 
> > Thanks
> > 
> > Huang Yingzhu
> > > -----????-----
> > > ???: [email protected]
> > > ????: 2015?6?30? ???
> > > ???: [email protected]
> > > ??: 
> > > ??: arts-users Digest, Vol 74, Issue 18
> > > 
> > > Send arts-users mailing list submissions to
> > >  [email protected]
> > > 
> > > To subscribe or unsubscribe via the World Wide Web, visit
> > >  https://www.sat.ltu.se/mailman/listinfo/arts-users
> > > or, via email, send a message with subject or body 'help' to
> > >  [email protected]
> > > 
> > > You can reach the person managing the list at
> > >  [email protected]
> > > 
> > > When replying, please edit your Subject line so it is more specific
> > > than "Re: Contents of arts-users digest..."
> > > 
> > > 
> > > Today's Topics:
> > > 
> > >    1. Re: arts-users Digest, Vol 74, Issue 14 (Jana Mendrok)
> > > 
> > > 
> > > ----------------------------------------------------------------------
> > > 
> > > Message: 1
> > > Date: Tue, 30 Jun 2015 10:31:50 +0200
> > > From: Jana Mendrok <[email protected]>
> > > Subject: Re: [arts-users] arts-users Digest, Vol 74, Issue 14
> > > To: ??? <[email protected]>
> > > Cc: "[email protected] List Users" <[email protected]>
> > > Message-ID:
> > >  <CA+DyGd6yminjRmzrA5WvJB=cZ=iFZjH==ekAiKkiW_==sgl...@mail.gmail.com>
> > > Content-Type: text/plain; charset="utf-8"
> > > 
> > > it's in scattering folder of the arts-xml-data.
> > > 
> > > On Tue, Jun 30, 2015 at 10:26 AM, ??? <[email protected]> wrote:
> > > 
> > > > Hi,Jana,
> > > >
> > > > Yes,I have two vertion of ARTS,one is 2.2,one is 2.3.I run them by
> > > > switched.
> > > > The example control file in FOS There is a file to read as follows,but I
> > > > have no the file of
> > > > fosangles_360.xml,.
> > > > ReadXML(fos_scatint_angles,"scattering/fosangles_360.xml")
> > > >
> > > > Can you send it to me attached?
> > > >
> > > > Thanks
> > > >
> > > > Huang Yingzhu
> > > >
> > > > > -----????-----
> > > > > ???: [email protected]
> > > > > ????: 2015?6?30? ???
> > > > > ???: [email protected]
> > > > > ??:
> > > > > ??: arts-users Digest, Vol 74, Issue 14
> > > > >
> > > > > Send arts-users mailing list submissions to
> > > > >  [email protected]
> > > > >
> > > > > To subscribe or unsubscribe via the World Wide Web, visit
> > > > >  https://www.sat.ltu.se/mailman/listinfo/arts-users
> > > > > or, via email, send a message with subject or body 'help' to
> > > > >  [email protected]
> > > > >
> > > > > You can reach the person managing the list at
> > > > >  [email protected]
> > > > >
> > > > > When replying, please edit your Subject line so it is more specific
> > > > > than "Re: Contents of arts-users digest..."
> > > > >
> > > > >
> > > > > Today's Topics:
> > > > >
> > > > >    1. Re: About ParticleType2abs_speciesAdd in batch calculation
> > > > >       (Jana Mendrok)
> > > > >    2. Re: Storing HDF5 hydrometeors concentrations as particle
> > > > >       density field (Karen Ng)
> > > > >    3. Re: Storing HDF5 hydrometeors concentrations as particle
> > > > >       density field (Jana Mendrok)
> > > > >    4. Re: Contents of arts-users digest about use
> > > > >       ParticleType2abs_speciesAdd in batch calculation (???)
> > > > >    5. Re: Contents of arts-users digest about use
> > > > >       ParticleType2abs_speciesAdd in batch calculation (Jana Mendrok)
> > > > >
> > > > >
> > > > > ----------------------------------------------------------------------
> > > > >
> > > > > Message: 1
> > > > > Date: Mon, 29 Jun 2015 22:08:59 +0200
> > > > > From: Jana Mendrok <[email protected]>
> > > > > Subject: Re: [arts-users] About ParticleType2abs_speciesAdd in batch
> > > > >  calculation
> > > > > To: ??? <[email protected]>
> > > > > Cc: "[email protected] List Users" <[email protected]>
> > > > > Message-ID:
> > > > >  
> > > > > <CA+DyGd5LhRTCpp0OwXbwQGG2ULMbrf3aN20dybGq4EsuTok=6...@mail.gmail.com>
> > > > > Content-Type: text/plain; charset="utf-8"
> > > > >
> > > > > Hi Huang,
> > > > >
> > > > > i think, one indeed can not use ParticleType2abs_speciesAdd for batch
> > > > > cases. there might be a possibility to mimic its behaviour by a bunch 
> > > > > of
> > > >
> > > > > other ARTS workspace methods. but i can't say that for sure from the 
> > > > > top of
> > > >
> > > > > my head. give me like 2 days, and i'll check whether and what can be 
> > > > > done.
> > > > >
> > > > > best wishes,
> > > > > Jana
> > > > >
> > > > >
> > > > > On Mon, Jun 29, 2015 at 5:19 AM, ??? <[email protected]> wrote:
> > > > >
> > > > > > Hi,all
> > > > > > I want use ParticleType2abs_speciesAdd
> > > > > > <
> > > > http://www.sat.ltu.se/arts/docserver/methods/ParticleType2abs_speciesAdd>
> > > > > > in batch calculation,and my atmfield is get from
> > > > > > batch_atm_fields_compactFromArrayOfMatrix.So it does not generate 
> > > > > > the
> > > > > > vmr_filed_raw.
> > > > > > How can I use the ParticleType2abs_speciesAdd
> > > > > > <
> > > > http://www.sat.ltu.se/arts/docserver/methods/ParticleType2abs_speciesAdd>
> > > > > > in condition that no vmr_filed_raw generated? Or is there other way 
> > > > > > to
> > > > > > replace the ParticleType2abs_speciesAdd
> > > > > > <
> > > > http://www.sat.ltu.se/arts/docserver/methods/ParticleType2abs_speciesAdd>
> > > > > > method to add a particle absorption to the calculation?
> > > > > >
> > > > > > Thank you very much for your help.
> > > > > >
> > > > > > Huang Yingzhu
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > _______________________________________________
> > > > > > arts-users mailing list
> > > > > > [email protected]
> > > > > > https://www.sat.ltu.se/mailman/listinfo/arts-users
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > > --
> > > > > =====================================================================
> > > > > Jana Mendrok, Ph.D. (Research Associate)
> > > > > Lule? University of Technology
> > > > > Department of Computer Science, Electrical and Space Engineering
> > > > > Division of Space Technology
> > > > > PO Box 812
> > > > > 981 28 Kiruna, Sweden
> > > > >
> > > > > Phone : +46 (0)980 6 7540
> > > > > =====================================================================
> > > > > -------------- next part --------------
> > > > > An HTML attachment was scrubbed...
> > > > > URL:
> > > > http://www.sat.ltu.se/pipermail/arts-users/attachments/20150629/1bf53bca/attachment-0001.htm
> > > >
> > > > >
> > > > > ------------------------------
> > > > >
> > > > > Message: 2
> > > > > Date: Mon, 29 Jun 2015 20:40:24 +0000 (UTC)
> > > > > From: Karen Ng <[email protected]>
> > > > > Subject: Re: [arts-users] Storing HDF5 hydrometeors concentrations as
> > > > >  particle density field
> > > > > To: ARTS Users List <[email protected]>
> > > > > Message-ID:
> > > > >  <[email protected]>
> > > > > Content-Type: text/plain; charset="utf-8"
> > > > >
> > > > > Could anyone help me with this?
> > > > >
> > > > >
> > > > >      On Thursday, June 25, 2015 3:06 PM, Karen Ng <
> > > > [email protected]> wrote:
> > > > >
> > > > >
> > > >
> > > > >  I have an HDF5 file containing data for 5 ice hydrometer types. ?I 
> > > > > believe I can use the number concentrations for the particle field 
> > > > > density since they tell the number?of particles of a particular 
> > > > > hydrometeor type per volume of air at each grid box. There are 201 x 
> > > > > 201 horizontal grid points (100 km x 100 km) and 50 vertical grid 
> > > > > points, 13 times (output every 5 min for 1 hr). ?I believe I can use 
> > > > > xmlStore to create a GriddedField3 xml file, but don't know how to go 
> > > > > about this. ?Could anyone help?
> > > > >
> > > > > _______________________________________________
> > > > > arts-users mailing list
> > > > > [email protected]
> > > > > https://www.sat.ltu.se/mailman/listinfo/arts-users
> > > > >
> > > > >
> > > > >
> > > > > -------------- next part --------------
> > > > > An HTML attachment was scrubbed...
> > > > > URL:
> > > > http://www.sat.ltu.se/pipermail/arts-users/attachments/20150629/12f6fcc3/attachment-0001.htm
> > > >
> > > > >
> > > > > ------------------------------
> > > > >
> > > > > Message: 3
> > > > > Date: Tue, 30 Jun 2015 00:55:35 +0200
> > > > > From: Jana Mendrok <[email protected]>
> > > > > Subject: Re: [arts-users] Storing HDF5 hydrometeors concentrations as
> > > > >  particle density field
> > > > > To: Karen Ng <[email protected]>
> > > > > Cc: ARTS Users List <[email protected]>
> > > > > Message-ID:
> > > > >  <ca+dygd430igrev_bzo9jmyv6t9nxumh7pugyvmnjkf0qy7w...@mail.gmail.com>
> > > > > Content-Type: text/plain; charset="utf-8"
> > > > >
> > > > > Hi Karen,
> > > > >
> > > > > i assume you're talking about atmlab/matlab, which i'm no expert on.
> > > >
> > > > > however, most other people are in vacation right now, so i give it a 
> > > > > try...
> > > > >
> > > > > in the first place i'm not sure what exactly your actual problem is.
> > > >
> > > > > extracting the data from the hdf5 is fully on your responsibility. we 
> > > > > can't
> > > > > help with this, i guess.
> > > >
> > > > > regarding preparing GF3 xml data out of it, you have to extract one 
> > > > > 3D time
> > > >
> > > > > snapshot at a time and put each time snapshot in a separate xml file. 
> > > > > each
> > > > > GF3 data consists of 3 grid vectors (pressure, lat, lon) and the 3D 
> > > > > data
> > > > > tensor.
> > > > >
> > > >
> > > > > to use xmlStore you have to prepare the GF3 data into its specific 
> > > > > format.
> > > > > i assume atmlab is using either cell arrays or structures for that. 
> > > > > which
> > > >
> > > > > one, i don't know. try to find it out from the documentation. or, 
> > > > > which is
> > > >
> > > > > probably easier, use xmlLoad on an existing GF3 xml file and check 
> > > > > out the
> > > > > format of the resulting data. i expect that input to xmlStore has to 
> > > > > have
> > > > > equivalent format.
> > > > > for putting you data into this said format, either build it up 
> > > > > yourself.
> > > >
> > > > > or, re-set the individual parts of the GF3 type variable that you got 
> > > > > from
> > > > > xmlLoad-ing a GF3 xml file.
> > > > >
> > > >
> > > > > or, alternative option, just check out the format of GF3 xml files 
> > > > > from an
> > > >
> > > > > example and write a little xmlWriteGF3 routine yourself in the 
> > > > > programming
> > > > > language of your choice. the format is very simple and should be
> > > > > reproducible using some basic string and number writing tools from any
> > > > > programming language.
> > > > >
> > > > > hope that helps a bit.
> > > > > good luck!
> > > > > Jana
> > > > >
> > > > > On Mon, Jun 29, 2015 at 10:40 PM, Karen Ng <[email protected]
> > > > > wrote:
> > > > >
> > > > > > Could anyone help me with this?
> > > > > >
> > > > > >
> > > > > >
> > > > > >   On Thursday, June 25, 2015 3:06 PM, Karen Ng 
> > > > > > <[email protected]
> > > > >
> > > > > > wrote:
> > > > > >
> > > > > >
> > > >
> > > > > > I have an HDF5 file containing data for 5 ice hydrometer types.  I 
> > > > > > believe
> > > >
> > > > > > I can use the number concentrations for the particle field density 
> > > > > > since
> > > > > > they tell the number of particles of a particular hydrometeor type 
> > > > > > per
> > > >
> > > > > > volume of air at each grid box. There are 201 x 201 horizontal grid 
> > > > > > points
> > > >
> > > > > > (100 km x 100 km) and 50 vertical grid points, 13 times (output 
> > > > > > every 5 min
> > > > > > for 1 hr).  I believe I can use xmlStore to create a GriddedField3 
> > > > > > xml
> > > > > > file, but don't know how to go about this.  Could anyone help?
> > > > > >
> > > > > >
> > > > > > _______________________________________________
> > > > > > arts-users mailing list
> > > > > > [email protected]
> > > > > > https://www.sat.ltu.se/mailman/listinfo/arts-users
> > > > > >
> > > > > >
> > > > > >
> > > > > > _______________________________________________
> > > > > > arts-users mailing list
> > > > > > [email protected]
> > > > > > https://www.sat.ltu.se/mailman/listinfo/arts-users
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > > --
> > > > > =====================================================================
> > > > > Jana Mendrok, Ph.D. (Research Associate)
> > > > > Lule? University of Technology
> > > > > Department of Computer Science, Electrical and Space Engineering
> > > > > Division of Space Technology
> > > > > PO Box 812
> > > > > 981 28 Kiruna, Sweden
> > > > >
> > > > > Phone : +46 (0)980 6 7540
> > > > > =====================================================================
> > > > > -------------- next part --------------
> > > > > An HTML attachment was scrubbed...
> > > > > URL:
> > > > http://www.sat.ltu.se/pipermail/arts-users/attachments/20150630/16b5130d/attachment-0001.htm
> > > >
> > > > >
> > > > > ------------------------------
> > > > >
> > > > > Message: 4
> > > > > Date: Tue, 30 Jun 2015 09:33:48 +0800 (GMT+08:00)
> > > > > From: ??? <[email protected]>
> > > > > Subject: Re: [arts-users] Contents of arts-users digest about use
> > > > >  ParticleType2abs_speciesAdd in batch calculation
> > > > > To: [email protected]
> > > > > Message-ID:
> > > > >  <[email protected]>
> > > > > Content-Type: text/plain; charset="gbk"
> > > > >
> > > > > Dear all,
> > > > >
> > > >
> > > > > I added scat_data_array to the abs_species "particles" and append the 
> > > > > pnd_field to the vmr_field,
> > > >
> > > > > but  I get the errors as follows when run the 
> > > > > propmat_clearskyAddParticles.
> > > > >
> > > > > Run-time error at ybatch_index 0:
> > > > > Run-time error in agenda: ybatch_calc_agenda
> > > > > Run-time error in method: propmat_clearsky_fieldCalc
> > > > > Run-time error in agenda: propmat_clearsky_agenda
> > > > > Run-time error in method: propmat_clearskyAddParticles
> > > > > Number of 'particles' entries in abs_species and of elements in
> > > > > scat_data_array needs to be identical. But you have 1 'particles' 
> > > > > entries
> > > > > and 0 scat_data_array elements.
> > > > >
> > > > > What happened?
> > > > >
> > > > > Thank you very much.
> > > > >
> > > > > Waiting for helping.
> > > > >
> > > > > Huang Yingzhu
> > > > >
> > > > >
> > > > >
> > > > > -------------- next part --------------
> > > > > An HTML attachment was scrubbed...
> > > > > URL:
> > > > http://www.sat.ltu.se/pipermail/arts-users/attachments/20150630/89e19e52/attachment-0001.htm
> > > >
> > > > >
> > > > > ------------------------------
> > > > >
> > > > > Message: 5
> > > > > Date: Tue, 30 Jun 2015 04:01:49 +0200
> > > > > From: Jana Mendrok <[email protected]>
> > > > > Subject: Re: [arts-users] Contents of arts-users digest about use
> > > > >  ParticleType2abs_speciesAdd in batch calculation
> > > > > To: ??? <[email protected]>
> > > > > Cc: "[email protected] List Users" <[email protected]>
> > > > > Message-ID:
> > > > >  <ca+dygd6syq+on9sdeaahqkmymseozc6q7cdgpnyywtdhz7t...@mail.gmail.com>
> > > > > Content-Type: text/plain; charset="utf-8"
> > > > >
> > > > > Hi Huang,
> > > > >
> > > >
> > > > > hard to make sense of your own description without seeing your 
> > > > > controlfile.
> > > > >
> > > > > according to the error message you did NOT add an instance of single
> > > > > scattering data to scat_data_array.
> > > >
> > > > > what do you mean by "added scat_data_array to the abs_species 
> > > > > "particles" "?
> > > > > per scattering element to be considered you have to (a) add a 
> > > > > "particle"
> > > > > entry to abs_species, (b) add/append the pnd_field(_raw) instance for 
> > > > > the
> > > > > scattering element to vmr_field(_raw) and (c) add/append an instance 
> > > > > of
> > > > > SingleScatteringData to scat_data_array.
> > > > >
> > > > > seems you missed the last.
> > > > >
> > > > > wishes,
> > > > > Jana
> > > > >
> > > > > On Tue, Jun 30, 2015 at 3:33 AM, ??? <[email protected]> wrote:
> > > > >
> > > > > > Dear all,
> > > > > >
> > > > > > I added scat_data_array to the abs_species "particles" and append 
> > > > > > the
> > > > > > pnd_field to the vmr_field,
> > > >
> > > > > > but  I get the errors as follows when run the 
> > > > > > propmat_clearskyAddParticles.
> > > > > >
> > > > > > Run-time error at ybatch_index 0:
> > > > > > Run-time error in agenda: ybatch_calc_agenda
> > > > > > Run-time error in method: propmat_clearsky_fieldCalc
> > > > > > Run-time error in agenda: propmat_clearsky_agenda
> > > > > > Run-time error in method: propmat_clearskyAddParticles
> > > > > > Number of 'particles' entries in abs_species and of elements in
> > > >
> > > > > > scat_data_array needs to be identical. But you have 1 'particles' 
> > > > > > entries
> > > > > > and 0 scat_data_array elements.
> > > > > >
> > > > > > What happened?
> > > > > >
> > > > > > Thank you very much.
> > > > > >
> > > > > > Waiting for helping.
> > > > > >
> > > > > > Huang Yingzhu
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > _______________________________________________
> > > > > > arts-users mailing list
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> > > > >
> > > > >
> > > > > --
> > > > > =====================================================================
> > > > > Jana Mendrok, Ph.D. (Research Associate)
> > > > > Lule? University of Technology
> > > > > Department of Computer Science, Electrical and Space Engineering
> > > > > Division of Space Technology
> > > > > PO Box 812
> > > > > 981 28 Kiruna, Sweden
> > > > >
> > > > > Phone : +46 (0)980 6 7540
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> > > > > End of arts-users Digest, Vol 74, Issue 14
> > > > > ******************************************
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> > > >
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> > > 
> > > -- 
> > > =====================================================================
> > > Jana Mendrok, Ph.D. (Research Associate)
> > > Lule? University of Technology
> > > Department of Computer Science, Electrical and Space Engineering
> > > Division of Space Technology
> > > PO Box 812
> > > 981 28 Kiruna, Sweden
> > > 
> > > Phone : +46 (0)980 6 7540
> > > =====================================================================
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> > End of arts-users Digest, Vol 74, Issue 19
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> End of arts-users Digest, Vol 74, Issue 21
> ******************************************



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