Bugs item #3090604, was opened at 2010-10-19 08:22 Message generated for change (Comment added) made by nobody You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=835077&aid=3090604&group_id=165310
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: Accepted Priority: 5 Private: No Submitted By: Mark Visontai (mvison) Assigned to: Nobody/Anonymous (nobody) Summary: multi-molecule file not read Initial Comment: attached two files: geometry_read.xyz geometry_notread.xyz difference is only 1 atom between these, former is read and rendered without problem, but for the latter the window appears: "Reading multi-molecule file. This may take a while..." and remains for hours. What can be the problem? ---------------------------------------------------------------------- Comment By: Nobody/Anonymous (nobody) Date: 2012-05-09 05:04 Message: N7GVkE <a href="http://veecajaryizk.com/";>veecajaryizk</a>, [url=http://vuhuszbqevnh.com/]vuhuszbqevnh[/url], [link=http://xxcecedtvvfs.com/]xxcecedtvvfs[/link], http://vnalrcgyaotx.com/ ---------------------------------------------------------------------- Comment By: Jaap Kroes (jaapkroe) Date: 2011-04-01 02:51 Message: Hi, I have the same problem (also with xyz). Displacing the problematic atoms or disabling "perceive bonding" allows me to open the file but this way it is not really workable.. I am trying to saturate the borders of my molecule with hydrogen which I can not do without the bonds. Any changes or other suggestions? ---------------------------------------------------------------------- Comment By: Geoff Hutchison (ghutchis) Date: 2011-03-21 19:41 Message: @annulen -- let me know what you think about this idea: 1) Add a timeout on the read-file (which happens in a thread anyway) 2) If the timeout occurs, re-open without bond perception I'd set the timeout for each call to OBConversion::Read() so that a "real" multi-molecule file won't hit the barrier. ---------------------------------------------------------------------- Comment By: Konstantin Tokarev (annulen) Date: 2010-10-19 08:30 Message: Use "File->Import...->Molecule File..." and disable "Perceive Bonding" ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=835077&aid=3090604&group_id=165310 ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Avogadro-devel mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/avogadro-devel
