Bugs item #3398688, was opened at 2011-08-26 07:47
Message generated for change (Comment added) made by ghutchis
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Category: Building / Install
>Group: v 1.1.0
Status: Open
>Resolution: Works For Me
Priority: 5
Private: No
Submitted By: Very Thibaut (veryt)
Assigned to: Nobody/Anonymous (nobody)
Summary: symbol lookup error: ./avogadro: undefined symbol: _ZN8Avoga
Initial Comment:
I get this error when I try to launch avogadro (latest sources) without super
user rights.
----------------------------------------------------------------------
>Comment By: Geoff Hutchison (ghutchis)
Date: 2012-06-14 19:07
Message:
(bump)
This works for me. Is it still a problem? If so, please report to the
mailing list.
----------------------------------------------------------------------
Comment By: Very Thibaut (veryt)
Date: 2011-08-26 08:17
Message:
As normal user :
linux-vdso.so.1 => (0x00007fff58fff000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f9c2f656000)
libQtOpenGL.so.4 => /usr/lib/libQtOpenGL.so.4 (0x00007f9c2f367000)
libQtGui.so.4 => /usr/lib/libQtGui.so.4 (0x00007f9c2e6c6000)
libQtNetwork.so.4 => /usr/lib/libQtNetwork.so.4
(0x00007f9c2e396000)
libQtCore.so.4 => /usr/lib/libQtCore.so.4 (0x00007f9c2df05000)
libopenbabel.so.4 => /usr/local/lib/libopenbabel.so.4
(0x00007f9c2dadf000)
libavogadro.so.1 => /usr/lib/libavogadro.so.1 (0x00007f9c2d808000)
libX11.so.6 => /usr/lib/x86_64-linux-gnu/libX11.so.6
(0x00007f9c2d4cd000)
libboost_python-py27.so.1.42.0 =>
/usr/lib/libboost_python-py27.so.1.42.0 (0x00007f9c2d27e000)
libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6
(0x00007f9c2cf78000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f9c2ccf2000)
libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1
(0x00007f9c2cadc000)
libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0
(0x00007f9c2c8be000)
/lib64/ld-linux-x86-64.so.2 (0x00007f9c2fa24000)
libfreetype.so.6 => /usr/lib/x86_64-linux-gnu/libfreetype.so.6
(0x00007f9c2c624000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2
(0x00007f9c2c420000)
libGL.so.1 => /usr/lib/mesa/libGL.so.1 (0x00007f9c2c1a3000)
libXrender.so.1 => /usr/lib/x86_64-linux-gnu/libXrender.so.1
(0x00007f9c2bf97000)
libfontconfig.so.1 => /usr/lib/x86_64-linux-gnu/libfontconfig.so.1
(0x00007f9c2bd61000)
libaudio.so.2 => /usr/lib/libaudio.so.2 (0x00007f9c2bb48000)
libglib-2.0.so.0 => /lib/x86_64-linux-gnu/libglib-2.0.so.0
(0x00007f9c2b858000)
libpng12.so.0 => /lib/x86_64-linux-gnu/libpng12.so.0
(0x00007f9c2b631000)
libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007f9c2b419000)
libgobject-2.0.so.0 =>
/usr/lib/x86_64-linux-gnu/libgobject-2.0.so.0 (0x00007f9c2b1c7000)
libSM.so.6 => /usr/lib/x86_64-linux-gnu/libSM.so.6
(0x00007f9c2afbf000)
libICE.so.6 => /usr/lib/x86_64-linux-gnu/libICE.so.6
(0x00007f9c2ada4000)
libXi.so.6 => /usr/lib/x86_64-linux-gnu/libXi.so.6
(0x00007f9c2ab93000)
libXext.so.6 => /usr/lib/x86_64-linux-gnu/libXext.so.6
(0x00007f9c2a981000)
libgthread-2.0.so.0 =>
/usr/lib/x86_64-linux-gnu/libgthread-2.0.so.0 (0x00007f9c2a77b000)
librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1
(0x00007f9c2a573000)
libopenbabel.so.3 => /usr/lib/libopenbabel.so.3
(0x00007f9c2a173000)
libGLU.so.1 => /usr/lib/libGLU.so.1 (0x00007f9c29f03000)
libGLEW.so.1.5 => /usr/lib/libGLEW.so.1.5 (0x00007f9c29cad000)
libpython2.7.so.1.0 => /usr/lib/libpython2.7.so.1.0
(0x00007f9c297a5000)
libxcb.so.1 => /usr/lib/x86_64-linux-gnu/libxcb.so.1
(0x00007f9c29588000)
libutil.so.1 => /lib/x86_64-linux-gnu/libutil.so.1
(0x00007f9c29385000)
libXdamage.so.1 => /usr/lib/x86_64-linux-gnu/libXdamage.so.1
(0x00007f9c29181000)
libXfixes.so.3 => /usr/lib/x86_64-linux-gnu/libXfixes.so.3
(0x00007f9c28f7b000)
libXxf86vm.so.1 => /usr/lib/x86_64-linux-gnu/libXxf86vm.so.1
(0x00007f9c28d75000)
libdrm.so.2 => /lib/x86_64-linux-gnu/libdrm.so.2
(0x00007f9c28b69000)
libexpat.so.1 => /lib/x86_64-linux-gnu/libexpat.so.1
(0x00007f9c2893f000)
libXt.so.6 => /usr/lib/x86_64-linux-gnu/libXt.so.6
(0x00007f9c286d8000)
libXau.so.6 => /usr/lib/x86_64-linux-gnu/libXau.so.6
(0x00007f9c284d5000)
libpcre.so.3 => /lib/x86_64-linux-gnu/libpcre.so.3
(0x00007f9c28299000)
libuuid.so.1 => /lib/x86_64-linux-gnu/libuuid.so.1
(0x00007f9c28093000)
libssl.so.0.9.8 => /usr/lib/libssl.so.0.9.8 (0x00007f9c27e40000)
libcrypto.so.0.9.8 => /usr/lib/libcrypto.so.0.9.8
(0x00007f9c27ab0000)
libXdmcp.so.6 => /usr/lib/x86_64-linux-gnu/libXdmcp.so.6
(0x00007f9c278aa000)
As super user :
linux-vdso.so.1 => (0x00007fffa3bff000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fb151044000)
libQtOpenGL.so.4 => /usr/lib/libQtOpenGL.so.4 (0x00007fb150d56000)
libQtGui.so.4 => /usr/lib/libQtGui.so.4 (0x00007fb1500b4000)
libQtNetwork.so.4 => /usr/lib/libQtNetwork.so.4 (0x00007fb14fd84000)
libQtCore.so.4 => /usr/lib/libQtCore.so.4 (0x00007fb14f8f4000)
libopenbabel.so.4 => /usr/local/lib/libopenbabel.so.4
(0x00007fb14f4cd000)
libavogadro.so.1 =>
/home/thibaut/sources/avogadro/build/lib/libavogadro.so.1
(0x00007fb14f1c3000)
libX11.so.6 => /usr/lib/x86_64-linux-gnu/libX11.so.6
(0x00007fb14ee89000)
libboost_python-py27.so.1.42.0 =>
/usr/lib/libboost_python-py27.so.1.42.0 (0x00007fb14ec39000)
libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6
(0x00007fb14e933000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fb14e6ae000)
libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1
(0x00007fb14e497000)
libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0
(0x00007fb14e279000)
/lib64/ld-linux-x86-64.so.2 (0x00007fb151412000)
libfreetype.so.6 => /usr/lib/x86_64-linux-gnu/libfreetype.so.6
(0x00007fb14dfe0000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fb14dddb000)
libGL.so.1 => /usr/lib/mesa/libGL.so.1 (0x00007fb14db5e000)
libXrender.so.1 => /usr/lib/x86_64-linux-gnu/libXrender.so.1
(0x00007fb14d953000)
libfontconfig.so.1 => /usr/lib/x86_64-linux-gnu/libfontconfig.so.1
(0x00007fb14d71c000)
libaudio.so.2 => /usr/lib/libaudio.so.2 (0x00007fb14d503000)
libglib-2.0.so.0 => /lib/x86_64-linux-gnu/libglib-2.0.so.0
(0x00007fb14d214000)
libpng12.so.0 => /lib/x86_64-linux-gnu/libpng12.so.0
(0x00007fb14cfec000)
libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007fb14cdd4000)
libgobject-2.0.so.0 => /usr/lib/x86_64-linux-gnu/libgobject-2.0.so.0
(0x00007fb14cb83000)
libSM.so.6 => /usr/lib/x86_64-linux-gnu/libSM.so.6 (0x00007fb14c97a000)
libICE.so.6 => /usr/lib/x86_64-linux-gnu/libICE.so.6
(0x00007fb14c75f000)
libXi.so.6 => /usr/lib/x86_64-linux-gnu/libXi.so.6 (0x00007fb14c54f000)
libXext.so.6 => /usr/lib/x86_64-linux-gnu/libXext.so.6
(0x00007fb14c33c000)
libgthread-2.0.so.0 => /usr/lib/x86_64-linux-gnu/libgthread-2.0.so.0
(0x00007fb14c137000)
librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007fb14bf2e000)
libGLU.so.1 => /usr/lib/libGLU.so.1 (0x00007fb14bcbf000)
libpython2.7.so.1.0 => /usr/lib/libpython2.7.so.1.0
(0x00007fb14b7b6000)
libxcb.so.1 => /usr/lib/x86_64-linux-gnu/libxcb.so.1
(0x00007fb14b59a000)
libutil.so.1 => /lib/x86_64-linux-gnu/libutil.so.1 (0x00007fb14b397000)
libXdamage.so.1 => /usr/lib/x86_64-linux-gnu/libXdamage.so.1
(0x00007fb14b193000)
libXfixes.so.3 => /usr/lib/x86_64-linux-gnu/libXfixes.so.3
(0x00007fb14af8d000)
libXxf86vm.so.1 => /usr/lib/x86_64-linux-gnu/libXxf86vm.so.1
(0x00007fb14ad86000)
libdrm.so.2 => /lib/x86_64-linux-gnu/libdrm.so.2 (0x00007fb14ab7b000)
libexpat.so.1 => /lib/x86_64-linux-gnu/libexpat.so.1
(0x00007fb14a951000)
libXt.so.6 => /usr/lib/x86_64-linux-gnu/libXt.so.6 (0x00007fb14a6ea000)
libXau.so.6 => /usr/lib/x86_64-linux-gnu/libXau.so.6
(0x00007fb14a4e7000)
libpcre.so.3 => /lib/x86_64-linux-gnu/libpcre.so.3 (0x00007fb14a2ab000)
libuuid.so.1 => /lib/x86_64-linux-gnu/libuuid.so.1 (0x00007fb14a0a5000)
libssl.so.0.9.8 => /lib/libssl.so.0.9.8 (0x00007fb149e52000)
libcrypto.so.0.9.8 => /lib/libcrypto.so.0.9.8 (0x00007fb149ac2000)
libXdmcp.so.6 => /usr/lib/x86_64-linux-gnu/libXdmcp.so.6
(0x00007fb1498bc000)
----------------------------------------------------------------------
Comment By: David Lonie (mr_grieves)
Date: 2011-08-26 08:12
Message:
What is the output of "ldd ./avogadro", both as regular user and root?
----------------------------------------------------------------------
Comment By: Very Thibaut (veryt)
Date: 2011-08-26 07:48
Message:
./avogadro: symbol lookup error: ./avogadro: undefined symbol:
_ZN8Avogadro13DockExtension16staticMetaObjectE
----------------------------------------------------------------------
You can respond by visiting:
https://sourceforge.net/tracker/?func=detail&atid=835077&aid=3398688&group_id=165310
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