Bugs item #3530874, was opened at 2012-05-30 10:36 Message generated for change (Comment added) made by nobody You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=835077&aid=3530874&group_id=165310
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: OpenQube Group: v 1.1.0 Status: Pending Resolution: Accepted Priority: 7 Private: No Submitted By: Michael Banck (mbanck) Assigned to: Geoff Hutchison (ghutchis) Summary: Segfault in orbital extension Initial Comment: The attached file crashes Avogadro for me on startup when the orbital extension is activated. Note that it contains no MO information, just vibrations. The backtrace is: Program received signal SIGSEGV, Segmentation fault. 0x00007fffcf1bcc2b in ?? () from /usr/lib/avogadro/1_1/extensions/orbitalextension.so (gdb) bt #0 0x00007fffcf1bcc2b in ?? () from /usr/lib/avogadro/1_1/extensions/orbitalextension.so #1 0x00007fffcf1b6ead in ?? () from /usr/lib/avogadro/1_1/extensions/orbitalextension.so #2 0x00007fffcf1b965b in ?? () from /usr/lib/avogadro/1_1/extensions/orbitalextension.so #3 0x00007fffcf1b9d90 in ?? () from /usr/lib/avogadro/1_1/extensions/orbitalextension.so #4 0x00007ffff5fd05b1 in Avogadro::Extension::qt_metacall(QMetaObject::Call, int, void**) () from /usr/lib/libavogadro.so.1 #5 0x00007fffcf1c4805 in ?? () from /usr/lib/avogadro/1_1/extensions/orbitalextension.so #6 0x00007ffff67c62e6 in QMetaObject::activate(QObject*, QMetaObject const*, int, void**) () from /usr/lib/libQtCore.so.4 #7 0x0000000000436b7d in ?? () #8 0x0000000000446021 in ?? () #9 0x00000000004462e7 in ?? () #10 0x0000000000450308 in ?? () #11 0x00007ffff67c62e6 in QMetaObject::activate(QObject*, QMetaObject const*, int, void**) () from /usr/lib/libQtCore.so.4 #12 0x00007ffff5fd1534 in Avogadro::MoleculeFile::qt_metacall(QMetaObject::Call, int, void**) () from /usr/lib/libavogadro.so.1 #13 0x00007ffff67c2e29 in QObject::event(QEvent*) () from /usr/lib/libQtCore.so.4 #14 0x00007ffff6cc332c in QApplicationPrivate::notify_helper(QObject*, QEvent*) () from /usr/lib/libQtGui.so.4 #15 0x00007ffff6cc980b in QApplication::notify(QObject*, QEvent*) () from /usr/lib/libQtGui.so.4 #16 0x00007ffff67b309c in QCoreApplication::notifyInternal(QObject*, QEvent*) () from /usr/lib/libQtCore.so.4 #17 0x00007ffff67b6744 in QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) () from /usr/lib/libQtCore.so.4 #18 0x00007ffff67dcb73 in ?? () from /usr/lib/libQtCore.so.4 #19 0x00007ffff42016f2 in g_main_context_dispatch () from /lib/libglib-2.0.so.0 #20 0x00007ffff4205568 in ?? () from /lib/libglib-2.0.so.0 #21 0x00007ffff420571c in g_main_context_iteration () from /lib/libglib-2.0.so.0 #22 0x00007ffff67dc6b3 in QEventDispatcherGlib::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) () from /usr/lib/libQtCore.so.4 #23 0x00007ffff6d7319e in ?? () from /usr/lib/libQtGui.so.4 #24 0x00007ffff67b6b8f in QCoreApplication::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) () from /usr/lib/libQtCore.so.4 #25 0x000000000046196d in ?? () #26 0x00007ffff7a9bc8d in __libc_start_main () from /lib/libc.so.6 #27 0x0000000000420129 in _start () ---------------------------------------------------------------------- Comment By: Nobody/Anonymous (nobody) Date: 2012-07-22 13:00 Message: BkHBWE <a href="http://furzcdzaloyp.com/";>furzcdzaloyp</a>, [url=http://pqmabkrgjdbk.com/]pqmabkrgjdbk[/url], [link=http://lgdhvfrkivvv.com/]lgdhvfrkivvv[/link], http://xwoezwcrhiik.com/ ---------------------------------------------------------------------- Comment By: Geoff Hutchison (ghutchis) Date: 2012-06-13 21:26 Message: This file seems to expose a bug in Open Babel's molden support as well. When I successfully open the file, I see only 2 hydrogen atoms! I submitted a patch to Gerrit which seems to fix the Avogadro side for me. http://review.source.kitware.com/#/t/814 ---------------------------------------------------------------------- Comment By: Michael Banck (mbanck) Date: 2012-05-30 10:44 Message: Just to be clear, openbabel seems to read this one in fine. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=835077&aid=3530874&group_id=165310 ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Avogadro-devel mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/avogadro-devel
