Bugs item #3488568, was opened at 2012-02-17 06:01 Message generated for change (Comment added) made by nobody You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=835077&aid=3488568&group_id=165310
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Building / Install Group: v 1.1.0 Status: Open Resolution: None Priority: 5 Private: No Submitted By: Ray (rsheppar) Assigned to: Marcus D. Hanwell (cryosuk) Summary: Make install cannot find libavogadro.so.1.0.3 Initial Comment: Hi, Sorry to bother you but I have been looking in the bugs/docs and cannot find my trouble. I am on RedHat 4 on a X86_64 machine. Everything builds (or seems to build fine. Below is my output from "make all" and "make install" It looks like I could almost just harvest the binaries into the library if I knew what the right string is. Any suggestions of other information I could provide, I would be happy to oblige. I am logged into Source Forge, but I see no field for my contact info. My e-mail address, if needed, is [email protected] Thanks. Ray rsheppar@Quarry: /N/dc/projects/ray/pharma/avogadro> make all Linking CXX shared library ../../lib/libavogadro.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpc5uJKXVas_.s /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/QR/SelfAdjointEigenSolver.h(385): (col. 7) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/QR/SelfAdjointEigenSolver.h(385): (col. 7) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/QR/Tridiagonalization.h(284): (col. 66) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/QR/Tridiagonalization.h(287): (col. 72) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/Core/Block.h(227): (col. 5) remark: LOOP WAS VECTORIZED. [ 20%] Built target avogadro Linking CXX shared module ../../../lib/axesengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcusdLDjas_.s [ 21%] Built target axesengine Linking CXX shared module ../../../lib/cartoonengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpc0Ie0gcas_.s [ 22%] Built target cartoonengine Linking CXX shared module ../../../lib/dipoleengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcCi5E8xas_.s [ 23%] Built target dipoleengine Linking CXX shared module ../../../lib/forceengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpc8tMb4Has_.s [ 23%] Built target forceengine Linking CXX shared module ../../../lib/hbondengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcHiDiQFas_.s [ 24%] Built target hbondengine Linking CXX shared module ../../../lib/labelengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcPo9P2yas_.s [ 25%] Built target labelengine Linking CXX shared module ../../../lib/overlayengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcI9bipias_.s [ 25%] Built target overlayengine Linking CXX shared module ../../../lib/polygonengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcht3R65as_.s [ 26%] Built target polygonengine Linking CXX shared module ../../../lib/ribbonengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcDSHeeOas_.s [ 26%] Built target ribbonengine Linking CXX shared module ../../../lib/ringengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpc7rkJobas_.s [ 27%] Built target ringengine Linking CXX shared module ../../../lib/simplewireengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcB6o6SBas_.s [ 28%] Built target simplewireengine Linking CXX shared module ../../../lib/sphereengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpc180xTjas_.s [ 28%] Built target sphereengine Linking CXX shared module ../../../lib/stickengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcuq34mNas_.s [ 29%] Built target stickengine Linking CXX shared module ../../../lib/surfaceengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcIcsj5das_.s [ 30%] Built target surfaceengine Linking CXX shared module ../../../lib/wireengine.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcStpxAcas_.s [ 31%] Built target wireengine Linking CXX shared module ../../../lib/aligntool.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcIW8VdPas_.s [ 31%] Built target aligntool Linking CXX shared module ../../../lib/autoopttool.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcoAXgeFas_.s [ 32%] Built target autoopttool Linking CXX shared module ../../../lib/autorotatetool.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcrFqNtCas_.s [ 33%] Built target autorotatetool Linking CXX shared module ../../../lib/bondcentrictool.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcCaO7wSas_.s /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/Geometry/Transform.h(587): (col. 17) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/Geometry/Transform.h(587): (col. 17) remark: LOOP WAS VECTORIZED. [ 35%] Built target bondcentrictool Linking CXX shared module ../../../lib/clickmeasuretool.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcFxyWvNas_.s [ 36%] Built target clickmeasuretool Linking CXX shared module ../../../lib/drawtool.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcMzT1hYas_.s [ 37%] Built target drawtool Linking CXX shared module ../../../lib/manipulatetool.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpciqg33kas_.s [ 38%] Built target manipulatetool Linking CXX shared module ../../../lib/navigatetool.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpchzqUlKas_.s [ 40%] Built target navigatetool Linking CXX shared module ../../../lib/selectrotatetool.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcC2EIFIas_.s [ 41%] Built target selectrotatetool Linking CXX shared module ../../../lib/animationextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpciaWEV8as_.s [ 44%] Built target animationextension Linking CXX shared module ../../../lib/fileimportextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcdEsSXMas_.s [ 44%] Built target fileimportextension Linking CXX shared module ../../../lib/forcefieldextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcJwgicras_.s [ 48%] Built target forcefieldextension Linking CXX shared module ../../../lib/gamessextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcTletxDas_.s /N/dc/projects/ray/pharma/avogadro-1.0.3/libavogadro/src/extensions/gamessinputdata.cpp(55): (col. 5) remark: LOOP WAS VECTORIZED. [ 51%] Built target gamessextension Linking CXX shared module ../../../lib/h2methylextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcP99g65as_.s [ 51%] Built target h2methylextension Linking CXX shared module ../../../lib/hydrogenextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcl7VXU7as_.s [ 52%] Built target hydrogenextension Linking CXX shared module ../../../lib/inputfileextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcXszhPUas_.s [ 56%] Built target inputfileextension Linking CXX shared module ../../../lib/insertfragmentextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcinSTUfas_.s [ 58%] Built target insertfragmentextension Linking CXX shared module ../../../lib/insertpeptideextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpciGJ6kAas_.s [ 59%] Built target insertpeptideextension Linking CXX shared module ../../../lib/molecularpropextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcXOAwI6as_.s [ 60%] Built target molecularpropextension Linking CXX shared module ../../../lib/networkfetchextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcsiiW4qas_.s [ 60%] Built target networkfetchextension Linking CXX shared module ../../../lib/povrayextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcMeqTHpas_.s [ 62%] Built target povrayextension Linking CXX shared module ../../../lib/propextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcxTNGnzas_.s /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/Geometry/Transform.h(587): (col. 17) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/Geometry/Transform.h(587): (col. 17) remark: LOOP WAS VECTORIZED. [ 63%] Built target propextension Linking CXX shared module ../../../lib/selectextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcrYk597as_.s [ 64%] Built target selectextension Linking CXX shared module ../../../lib/spectraextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcT2azckas_.s [ 67%] Built target spectraextension Linking CXX shared module ../../../lib/supercellextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpclVcvURas_.s [ 68%] Built target supercellextension Linking CXX shared module ../../../lib/surfaceextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpck9w5UGas_.s /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/Core/SolveTriangular.h(175): (col. 89) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/Core/SolveTriangular.h(175): (col. 89) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/Core/SolveTriangular.h(215): (col. 33) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/Core/SolveTriangular.h(215): (col. 33) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/Core/SolveTriangular.h(175): (col. 89) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/Core/SolveTriangular.h(175): (col. 89) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/Core/Dot.h(279): (col. 41) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/QR/SelfAdjointEigenSolver.h(385): (col. 7) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/QR/SelfAdjointEigenSolver.h(385): (col. 7) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/QR/Tridiagonalization.h(287): (col. 72) remark: LOOP WAS VECTORIZED. [ 73%] Built target surfaceextension Linking CXX shared module ../../../lib/unitcellextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcN3GceUas_.s [ 75%] Built target unitcellextension Linking CXX shared module ../../../lib/vibrationextension.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpc4yx7ePas_.s [ 76%] Built target vibrationextension Linking CXX shared module ../../../lib/atomindexcolor.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcIbX8EPas_.s [ 76%] Built target atomindexcolor Linking CXX shared module ../../../lib/chargecolor.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcXAS9Y9as_.s [ 77%] Built target chargecolor Linking CXX shared module ../../../lib/customcolor.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcw7rcxqas_.s [ 78%] Built target customcolor Linking CXX shared module ../../../lib/distancecolor.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcdKrHKSas_.s [ 78%] Built target distancecolor Linking CXX shared module ../../../lib/residuecolor.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcyFAbCjas_.s [ 79%] Built target residuecolor Linking CXX executable ../../bin/avogadro icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpcA7F7r2as_.s /N/dc/projects/ray/pharma/avogadro-1.0.3/avogadro/gl2ps/gl2ps.c(3682): (col. 7) remark: FUSED LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/avogadro-1.0.3/avogadro/gl2ps/gl2ps.c(3683): (col. 7) remark: FUSED LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/avogadro-1.0.3/avogadro/gl2ps/gl2ps.c(3690): (col. 11) remark: FUSED LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/avogadro-1.0.3/avogadro/gl2ps/gl2ps.c(3710): (col. 11) remark: FUSED LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/avogadro-1.0.3/avogadro/gl2ps/gl2ps.c(3733): (col. 11) remark: FUSED LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/avogadro-1.0.3/avogadro/gl2ps/gl2ps.c(5054): (col. 3) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/avogadro-1.0.3/avogadro/gl2ps/gl2ps.c(4935): (col. 5) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/avogadro-1.0.3/avogadro/gl2ps/gl2ps.c(4946): (col. 5) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/avogadro-1.0.3/avogadro/gl2ps/gl2ps.c(4957): (col. 5) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/avogadro-1.0.3/avogadro/gl2ps/gl2ps.c(4968): (col. 5) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/avogadro-1.0.3/avogadro/gl2ps/gl2ps.c(3529): (col. 7) remark: FUSED LOOP WAS VECTORIZED. [100%] Built target avogadro-app rsheppar@Quarry: /N/dc/projects/ray/pharma/avogadro> make install [ 20%] Built target avogadro [ 21%] Built target axesengine [ 22%] Built target cartoonengine [ 23%] Built target dipoleengine [ 23%] Built target forceengine [ 24%] Built target hbondengine [ 25%] Built target labelengine [ 25%] Built target overlayengine [ 26%] Built target polygonengine [ 26%] Built target ribbonengine [ 27%] Built target ringengine [ 28%] Built target simplewireengine [ 28%] Built target sphereengine [ 29%] Built target stickengine [ 30%] Built target surfaceengine [ 31%] Built target wireengine [ 31%] Built target aligntool [ 32%] Built target autoopttool [ 33%] Built target autorotatetool [ 35%] Built target bondcentrictool [ 36%] Built target clickmeasuretool [ 37%] Built target drawtool [ 38%] Built target manipulatetool [ 40%] Built target navigatetool [ 41%] Built target selectrotatetool [ 44%] Built target animationextension [ 44%] Built target fileimportextension [ 48%] Built target forcefieldextension [ 51%] Built target gamessextension [ 51%] Built target h2methylextension [ 52%] Built target hydrogenextension [ 56%] Built target inputfileextension [ 58%] Built target insertfragmentextension [ 59%] Built target insertpeptideextension [ 60%] Built target molecularpropextension [ 60%] Built target networkfetchextension [ 62%] Built target povrayextension [ 63%] Built target propextension [ 64%] Built target selectextension [ 67%] Built target spectraextension [ 68%] Built target supercellextension [ 73%] Built target surfaceextension [ 75%] Built target unitcellextension [ 76%] Built target vibrationextension [ 76%] Built target atomindexcolor [ 77%] Built target chargecolor [ 78%] Built target customcolor [ 78%] Built target distancecolor [ 79%] Built target residuecolor [100%] Built target avogadro-app Install the project... -- Install configuration: "Release" -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/lib/avogadro/AvogadroConfig.cmake -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/lib/avogadro/AvogadroConfigVersion.cmake -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/lib/avogadro/1_0/AvogadroUse.cmake -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/lib/avogadro/1_0/AvogadroBuildSettings.cmake -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/lib/avogadro/1_0/AvogadroLibraryDeps.cmake -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/lib/avogadro/1_0/cmake/FindEigen2.cmake -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/lib/avogadro/1_0/cmake/FindGLEW.cmake -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alcohols -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alcohols/ethanol.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alcohols/methanol.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alcohols/propan-1-ol.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alcohols/propan-2-ol.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aldehydes -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aldehydes/acetaldehyde.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aldehydes/formaldehyde.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alkanes -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alkanes/2-methylpropane.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alkanes/ethane.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alkanes/methane.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alkanes/propane.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alkenes -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alkenes/but-1-ene.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alkenes/ethene.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alkynes -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alkynes/acetylene.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/alkynes/propyne.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amides -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amides/N_N-dimethylacetamide.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amides/N_N-dimethylformamide.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amides/acetamide.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amides/ethyl_carbamate.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amides/oxamide.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amines -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amines/ammonia.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amines/azepane.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amines/ethylamine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amines/methylamine.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-alanine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-allo-threonine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-arginine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-asparagine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-aspartic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-cysteine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-glutamic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-glutamine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-histidine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-isoleucine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-leucine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-lysine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-methionine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-phenylalanine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-proline.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-serine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-threonine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-tryptophan.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-tyrosine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/D-valine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-4-nitrophenylalanine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-alanine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-allo-isoleucine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-arginine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-asparagine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-aspartic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-cysteine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-glutamic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-glutamine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-histidine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-isoleucine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-leucine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-lysine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-methionine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-phenylalanine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-proline.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-serine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-threonine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-tryptophan.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-tyrosine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/L-valine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/amino_acids/glycine.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aromatics -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aromatics/1H-indene.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aromatics/aniline.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aromatics/anisole.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aromatics/anthracene.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aromatics/benzaldehyde.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aromatics/benzene.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aromatics/benzoic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aromatics/benzoyl_chloride.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aromatics/caffeine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aromatics/naphthalene.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aromatics/nitrobenzene.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aromatics/phenol.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/aromatics/toluene.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbamides -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbamides/urea.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-allose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-altrose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-arabinose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-erythrose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-erythrulose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-fructose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-galactose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-glucose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-glyceraldehyde.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-gulose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-idose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-lyxose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-mannose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-psicose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-ribose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-ribulose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-sorbose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-tagatose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-talose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-threose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-xylose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/d-xylulose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carbohydrates/dihydroxyacetone.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/2_2-dichloroacetic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/2_2_2-trichloroacetic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/2_2_2-trifluoroacetic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/D-lactic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/D-malic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/D-tartaric_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/L-ascorbic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/L-lactic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/L-malic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/L-tartaric_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/acetic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/butanoic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/citric_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/formic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/isobutyric_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/oxalic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/carboxylic_acids/propanoic_acid.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/coordination -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/coordination/3-trigonal-planar.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/coordination/3-trigonal-pyramidal.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/coordination/4-planar.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/coordination/4-tetrahedral.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/coordination/5-square-pyramidal.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/coordination/5-trigonal-bipyramidal.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/coordination/6-octahedral.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic alkanes -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic alkanes/adamantane.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic alkanes/cubane.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic alkanes/cyclobutane.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic alkanes/cycloheptane.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic alkanes/cyclopentane.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic alkanes/cyclopropane.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic alkanes/norbornane.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic alkanes/cyclohexane.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-allopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-arabinopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-fucopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-galactopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-galacturonopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-glucopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-glucuronopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-gulopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-idopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-lyxopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-mannopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-psicopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-rhamnopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-ribopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-tagatopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-talopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-D-xylopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-L-arabinopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-L-fucopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-L-galactopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-L-lyxopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-L-rhamnopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-L-ribopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-L-sorbopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/alpha-L-xylopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-allopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-arabinopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-fructopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-fucopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-galactopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-glucopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-gulopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-idopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-lyxopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-mannopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-rhamnopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-ribopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-tagatopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-talopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-D-xylopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-L-arabinopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-L-lyxopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-L-ribopyranose.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/cyclic sugars/beta-L-xylopyranose.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/ethers -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/ethers/di-tert-butylether.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/ethers/dibutylether.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/ethers/diethylether.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/ethers/diisopropylether.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/ethers/dimethylether.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/ethers/dipropylether.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/ethers/ethylmethylether.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/ethers/tetrahydrofuran.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/fatty acids -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/fatty acids/decanoic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/fatty acids/hexanoic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/fatty acids/lauric_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/fatty acids/linoleic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/fatty acids/octanoic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/fatty acids/oleic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/fatty acids/palmitic_acid.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/fatty acids/stearic_acid.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/heteroaromatics -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/heteroaromatics/1H-indole.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/heteroaromatics/1H-pyrazole.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/heteroaromatics/1H-pyrrole.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/heteroaromatics/1_2-oxazole.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/heteroaromatics/1_2-thiazole.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/heteroaromatics/1_3-oxazole.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/heteroaromatics/1_3-thiazole.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/heteroaromatics/benzofuran.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/heteroaromatics/benzothiophene.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/heteroaromatics/furan.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/heteroaromatics/pyridine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/heteroaromatics/thiophene.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/ketones -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/ketones/acetone.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/ketones/butanone.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/macrocycles -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/macrocycles/porphin.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/nucleobases -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/nucleobases/adenine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/nucleobases/cytosine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/nucleobases/guanine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/nucleobases/thymine.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/nucleobases/uracil.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/steroids -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/steroids/cholesterol.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/steroids/estradiol.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/steroids/testosterone.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/sulfoxides -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/sulfoxides/dimethyl_sulfoxide.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/thiols -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/thiols/ethanethiol.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/thiols/methanethiol.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/thiols/pentane-1-thiol.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/buckminsterfullerene.cml -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/fragments/water.cml -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder -- Installing: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-ala.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-arg.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-asn.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-asp.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-cys.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-gln.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-glu.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-his.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-ile.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-leu.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-lys.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-met.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-phe.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-pro.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-ser.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-thr.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-trp.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-tyr.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/d-val.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/gly.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-ala.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-arg.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-asn.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-asp.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-cys.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-gln.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-glu.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-his.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-ile.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-leu.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-lys.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-met.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-phe.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-pro.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-pyl.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-sec.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-ser.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-thr.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-trp.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-tyr.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/share/avogadro/builder/amino/l-val.zmat -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/bin/avopkg -- Up-to-date: /N/dc/projects/ray/pharma/avogadro/features/avogadro.prf CMake Error at libavogadro/src/cmake_install.cmake:42 (FILE): file INSTALL cannot find file "/N/dc/projects/ray/pharma/avogadro/lib/libavogadro.so.1.0.3" to install. Call Stack (most recent call first): libavogadro/cmake_install.cmake:37 (INCLUDE) cmake_install.cmake:75 (INCLUDE) ---------------------------------------------------------------------- Comment By: Nobody/Anonymous (nobody) Date: 2012-08-17 10:06 Message: dOmIfU <a href="http://poxwsiicmesd.com/";>poxwsiicmesd</a>, [url=http://fposukqyrmiz.com/]fposukqyrmiz[/url], [link=http://llpdiwztlczh.com/]llpdiwztlczh[/link], http://qvfnxandmaex.com/ ---------------------------------------------------------------------- Comment By: Nobody/Anonymous (nobody) Date: 2012-07-21 06:36 Message: HSRRva <a href="http://rdglnpucipvi.com/";>rdglnpucipvi</a>, [url=http://ypcsnjyoiqhl.com/]ypcsnjyoiqhl[/url], [link=http://jjfsbcoeuflw.com/]jjfsbcoeuflw[/link], http://suhguuzrvnix.com/ ---------------------------------------------------------------------- Comment By: Geoff Hutchison (ghutchis) Date: 2012-06-15 12:03 Message: I'm revisiting for the 1.1 release. Is this still a problem? Thanks! ---------------------------------------------------------------------- Comment By: Ray (rsheppar) Date: 2012-02-22 00:47 Message: Hi All, I did several things. The biggest was to move from a Lustre mount to the supercomputer to a more traditional NFS mount and I installed CMake-2.8.7. That found a few bugs like not declaring #include <typeinfo> in OpenBabel during Avogadro's build. Except for some unknown "class xxx lacks Q_OBJECT macro" warnings, everything built and installed. Next up is to actually test it. My fingers are crossed. Thanks. Ray ---------------------------------------------------------------------- Comment By: Ray (rsheppar) Date: 2012-02-18 16:24 Message: Hi again, Thans for getting back to me. When I tired the soft link, it complained of too many links. The linking seems to start off by linking with CXX libs and doesn't like someone being there already: /N/dc/projects/ray/pharma> cd avogadro/lib rsheppar@Quarry: /N/dc/projects/ray/pharma/avogadro/lib> ln -s libavogadro.so libavogadro.so.1.0.3 rsheppar@Quarry: /N/dc/projects/ray/pharma/avogadro/lib> cd .. rsheppar@Quarry: /N/dc/projects/ray/pharma/avogadro> make install make[2]: stat:lib/libavogadro.so: Too many levels of symbolic links make[2]: stat:lib/libavogadro.so.1.0.3: Too many levels of symbolic links Linking CXX shared library ../../lib/libavogadro.so icpc: command line remark #10148: option '-msse2' not supported ipo: remark #11000: performing multi-file optimizations ipo: remark #11006: generating assembly file /tmp/icpc6vng7Nas_.s /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/QR/SelfAdjointEigenSolver.h(385): (col. 7) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/QR/SelfAdjointEigenSolver.h(385): (col. 7) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/QR/Tridiagonalization.h(284): (col. 66) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/QR/Tridiagonalization.h(287): (col. 72) remark: LOOP WAS VECTORIZED. /N/dc/projects/ray/pharma/eigen2/include/eigen2/Eigen/src/Core/Block.h(227): (col. 5) remark: LOOP WAS VECTORIZED. ld: cannot open output file ../../lib/libavogadro.so.1.0.3: Too many levels of symbolic links make[2]: *** [lib/libavogadro.so.1.0.3] Error 1 make[1]: *** [libavogadro/src/CMakeFiles/avogadro.dir/all] Error 2 make: *** [all] Error 2 ___________________ Ray ---------------------------------------------------------------------- Comment By: David Lonie (mr_grieves) Date: 2012-02-18 06:50 Message: This looks like a CMake problem. Marcus, do you know what could be causing this? My first thought was that it might be because the intel compiler was being used, but that shouldn't cause the symlinks to not be generated... In the meantime, try creating a link from the existing libavogadro.so to libavogadro.so.1.0.3 manually: cd /N/dc/projects/ray/pharma/avogadro/lib ln -s libavogadro.so libavogadro.so.1.0.3 and re-run make install. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=835077&aid=3488568&group_id=165310 ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. 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