Bugs item #3102300, was opened at 2010-11-03 09:11 Message generated for change (Comment added) made by nobody You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=835077&aid=3102300&group_id=165310
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Open Babel Group: v 1.1.0 Status: Open Resolution: Fixed Priority: 5 Private: No Submitted By: Nobody/Anonymous (nobody) Assigned to: Geoff Hutchison (ghutchis) Summary: Minor bug for terminal serine peptides Initial Comment: When I use the peptide builder to build peptides with a C-terminal serine and save then as a pdb file, the residues names of the entire peptide go to UNK instead of the right names (... - ... - SER). I've built all dipeptide combinations and it happened in all of the ones with a terminal Ser. Contact: [email protected] OS: Mac OS X 10.6.4 ---------------------------------------------------------------------- Comment By: Nobody/Anonymous (nobody) Date: 2012-08-23 06:50 Message: Good day! I know this is kind of off topic but I was wondering which blog platform are you using for this website? I'm getting tired of Wordpress because I've had problems with hackers and I'm looking at options for another platform. I would be great if you could point me in the direction of a good platform. http://www.comfortablefleecejackets.com/ ---------------------------------------------------------------------- Comment By: Geoff Hutchison (ghutchis) Date: 2012-07-27 08:11 Message: Sorry, try one of the nightly unstable builds: http://avogadro.openmolecules.net/nightly/mac/unstable/ This has the patch "baked in" already -- it's compiled on my desktop every night. Hope that helps, -Geoff ---------------------------------------------------------------------- Comment By: Pim Frederix (prinsf) Date: 2012-07-27 05:53 Message: Great, but how can I find and apply this patch? I have to make 400 structures with terminal serines, so I'd prefer to have this fixed before I start. Sorry for the trouble. ---------------------------------------------------------------------- Comment By: Geoff Hutchison (ghutchis) Date: 2012-06-14 23:36 Message: This should now be fixed fully in a new patch, which avoids calling OBChainsParser unless absolutely necessary. http://review.source.kitware.com/#/t/819 ---------------------------------------------------------------------- Comment By: Geoff Hutchison (ghutchis) Date: 2011-03-21 18:30 Message: I agree. I'll add this to the OB test set and see if I can find the bug. Thanks pim! ---------------------------------------------------------------------- Comment By: Konstantin Tokarev (annulen) Date: 2010-11-03 09:24 Message: I suspect OpenBabel bug here ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=835077&aid=3102300&group_id=165310 ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Avogadro-devel mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/avogadro-devel
