> Avogadro uses OpenBabel for this (http://openbabel.org). It supports 
> batch conversions for files using the (o)babel program. If you have 
> Avogadro installed, this is most likely installed on your system too.
>
> babel mysmiles.smi foo.png -m
>
> The -m option turns the multi-molecule file into seperate png files 
> (foo1.png, foo2.png, ...). There is also support for SVG output.
>
> Hope this helps,
> Tim
Hi Tim,
Thansk for the hint, but I guess I didn’t specify what i meant with nice 
looking images Avogadro generates well enough, the image i want to 
create is a image of a 3d molecule. Similar to what you export from 
avogadro when you choose to export a PNG.
OpenBabel is only able to generate 2d text based image AFAIK. One 
possibility i have tested is to use OpenBabel to generate a .pdb file 
and then use raster3D to generate a 3d molecule image.
The image raster3d generate isn’t as nice as avogadros, and i have a 
hard time to render a atom of constant size. I want to have a Carbon 
atom to be the same size in pixels regardless of generating a simple CO 
or a more complex molecule. I dont know if avogadro supports this 
either, but at least if i could hack a python script i might be able to 
fix it myself in avogadro.

Regards,
Simon

------------------------------------------------------------------------------
Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS,
MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current
with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft
MVPs and experts. ON SALE this month only -- learn more at:
http://p.sf.net/sfu/learnmore_122712
_______________________________________________
Avogadro-devel mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/avogadro-devel

Reply via email to