There are some technical reasons and some political / licensing ones.

From a technical standpoint, Open Babel is at a bit of a dead-end. There are 
some long-needed code rewrites that need to happen that will break API and ABI. 
Furthermore, we learned that OB is not really ideal for interactive editing of 
molecules. The atom typing, hybridization, etc. are constantly changing in 
Avogadro. Some of the strange crashes seem to be due to the constant resetting 
and re-perception of these properties.

So it's easier from some technical standpoints to base Avogadro v2 with a 
somewhat different data model and call Open Babel as a process. As you know 
90+% of the usage is via the "babel" command and these code paths are highly 
tested and debugged.

(That's not to say there aren't disadvantages. The geometry optimization and 
force field work is harder in Avogadro v2.)

There were some licensing issues. Marcus Hanwell at Kitware and other 
developers were willing (and funded via some grants) to do a large amount of 
Avogadro v2 development, including an all new rendering engine. Kitware 
develops BSD-licensed code, and thus cannot derive from Open Babel.

Hope that helps,
-Geoff


> On Oct 21, 2014, at 7:45 AM, Conrad Hübler <[email protected]> wrote:
> 
> Dear avogadro developers,
> 
> I have a question regarding the implementation of openbabel in avogadro and 
> avogadro2: Why does (as far as I have seen it) avogadro use the openbabel 
> libs 
> and avogadro2 the binaries instead? Are there any advantages not using the 
> libraries directly?
> 
> Thanks and best regards
> Conrad
> 
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