Hi, Sorry it took a while, I had less time on the weekend than I thought I would have.
On Fri, Jun 03, 2016 at 05:55:53PM -0400, Geoffrey Hutchison wrote: > > I'm happy to test-package it for Debian/Ubuntu, if you can point me at a > > tarball. > > https://github.com/cryos/avogadro/archive/master.tar.gz > > I have not yet created a 1.2 branch. OK, I gave it a shot on Debian stable and unstable. Most patches we had or 1.0.3 seem to no longer apply, except for the first three hunk of this one: http://anonscm.debian.org/viewvc/debichem/unstable/avogadro/debian/patches/boost148.patch?revision=3743&view=markup Not sure that is still useful/needed. About building: Debian unstable has eigen-3.3beta, and it fails to build with that: |make[3]: Entering directory '/«PKGBUILDDIR»/obj-x86_64-linux-gnu' |[ 0%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o |cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /«PKGBUILDDIR»/libavogadro/src/colors/elementcolor.cpp |In file included from /usr/include/x86_64-linux-gnu/c++/5/bits/os_defines.h:39:0, | from /usr/include/x86_64-linux-gnu/c++/5/bits/c++config.h:482, | from /usr/include/c++/5/utility:68, | from /usr/include/c++/5/algorithm:60, | from /usr/include/qt4/QtCore/qglobal.h:68, | from /usr/include/qt4/QtCore/qnamespace.h:45, | from /usr/include/qt4/QtCore/qobjectdefs.h:45, | from /usr/include/qt4/QtCore/qobject.h:47, | from /usr/include/qt4/QtCore/qtranslator.h:45, | from /usr/include/qt4/QtCore/QTranslator:1, | from /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libavogadro/include/avogadro/global.h:29, | from /«PKGBUILDDIR»/libavogadro/src/colors/elementcolor.h:29, | from /«PKGBUILDDIR»/libavogadro/src/colors/elementcolor.cpp:25: |/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^ |In file included from /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libavogadro/include/avogadro/primitive.h:36:0, | from /«PKGBUILDDIR»/libavogadro/src/colors/elementcolor.cpp:27: |/usr/include/eigen3/Eigen/Core:275:2: error: #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2"; for further information | #error Eigen2-support is only available up to version 3.2. Please go to "http://eigen.tuxfamily.org/index.php?title=Eigen2"; for further information | ^ |make[3]: *** [libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o] Error 1 The include chain might indicate that is an issue with Debian unstable's Qt/Eigen packages maybe, not sure. Also, I see the following warnings when running CMake: |-- Configuring done |CMake Warning (dev) in libavogadro/src/CMakeLists.txt: | Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link | interface. Run "cmake --help-policy CMP0022" for policy details. Use the | cmake_policy command to set the policy and suppress this warning. | | Target "avogadro" has an INTERFACE_LINK_LIBRARIES property which differs | from its LINK_INTERFACE_LIBRARIES properties. | | INTERFACE_LINK_LIBRARIES: | | openbabel;/usr/lib/x86_64-linux-gnu/libQtOpenGL.so;/usr/lib/x86_64-linux-gnu/libQtGui.so;/usr/lib/x86_64-linux-gnu/libQtCore.so;/usr/lib/x86_64-linux-gnu/libGLU.so;/usr/lib/x86_64-linux-gnu/libGL.so;/usr/lib/x86_64-linux-gnu/libGLEW.so;/usr/lib/x86_64-linux-gnu/libpython2.7.so;/usr/lib/x86_64-linux-gnu/libboost_python.so;bsdyengine;navigatetool;elementcolor | | LINK_INTERFACE_LIBRARIES: | | | |This warning is for project developers. Use -Wno-dev to suppress it. | |CMake Warning (dev) in libavogadro/src/extensions/surfaces/openqube/CMakeLists.txt: | Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link | interface. Run "cmake --help-policy CMP0022" for policy details. Use the | cmake_policy command to set the policy and suppress this warning. | | Target "OpenQube" has an INTERFACE_LINK_LIBRARIES property which differs | from its LINK_INTERFACE_LIBRARIES properties. | | INTERFACE_LINK_LIBRARIES: | | $<$<NOT:$<CONFIG:DEBUG>>:/usr/lib/x86_64-linux-gnu/libQtCore.so>;$<$<CONFIG:DEBUG>:/usr/lib/x86_64-linux-gnu/libQtCore.so>;$<$<NOT:$<CONFIG:DEBUG>>:/usr/lib/x86_64-linux-gnu/libQtGui.so>;$<$<CONFIG:DEBUG>:/usr/lib/x86_64-linux-gnu/libQtGui.so> | | LINK_INTERFACE_LIBRARIES: | | | |This warning is for project developers. Use -Wno-dev to suppress it. | |-- Generating done |CMake Warning: | Manually-specified variables were not used by the project: | | CMAKE_INSTALL_LOCALSTATEDIR | CMAKE_INSTALL_SYSCONFDIR | | |-- Build files have been written to: /«PKGBUILDDIR»/obj-x86_64-linux-gnu Debian stable built fine as it has eigen-3.2, but there are a lot of deprecation warnings about Eigen2: |/usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 |support is deprecated in Eigen 3.2.x and it will be removed in Eigen |3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this |warning)" [-Wcpp] A quick some test did not bring any serious bugs, but I really only opened the program, loaded 2 files and clicked a bit. Minor things I've noticed: 1. The menu bar in the german translation is busted - there's the equivalent to "Select" twice (with different parts of the menu), and the equivalent to the "Build" menu is empty. I didn't check the others. The empty Build menu seems to be present in 1.0.3 as well, just checked. 2. The View -> Properties -> Atom Properties window has no obvious button to close it, ctrl-w doesn't work either (this is with Gnome3). This behaviour is also already present in 1.0.3. Michael ------------------------------------------------------------------------------ What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic patterns at an interface-level. Reveals which users, apps, and protocols are consuming the most bandwidth. Provides multi-vendor support for NetFlow, J-Flow, sFlow and other flows. Make informed decisions using capacity planning reports. https://ad.doubleclick.net/ddm/clk/305295220;132659582;e _______________________________________________ Avogadro-devel mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/avogadro-devel
