> is much nicer than how we did it before, and it seems like it would be
> simple to add to CJSON.

I think it's a good idea to add selection to CJSON for a few reasons. One, the 
concept of "named selections" was in Avo1 but never really used. For example, 
an enhanced QM (or other) generator could allow you to mark a particular 
selection as QM/MM or support automatic fragment calculations, etc.

Also, the "run" scripts could mark selected atoms in CJSON, e.g., build a 
carbon nanotube and then allow the user to move it.

> I was going to look at adding a selection box next, and deletion of
> selected atoms. I also need to add undo/redo support, if anyone is
> interested in the half-working version I can share it on my fork of
> avogadrolibs,

I'd be happy to help with some of this.

Thanks,
-Geoff
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