> I'm a Phd student and I'll have to do 'systematic research of rotors' even 
> for much larger molecules.

You may want to investigate the genetic-algorithm and Monte Carlo weighted 
search options in Open Babel (which are used by Avogadro). These can be 
accessed from the babel command-line and GUI.

http://openbabel.org/docs/dev/Command-line_tools/babel.html#generating-conformers-for-structures

Hope that helps,
-Geoff
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