Stephen,
Thanks for the observation -- "interesting" is a tricky word.
Actually, I don't use pymol (chimera -- also Python-based -- and VMD are
my stock molecular viewers.) Though I notice that pymol 1.6.0. is
available through synaptic: just installed it, and it doesn't work!
Though the error is quite different ("freeglut (pymol): failed to open
display :0.0". Interestingalso, since my DISPLAY variable is set to
":0.0", and no other applications seem to have trouble opening it.)
Lot's of Python-based stuff does work on my machine.
So that's another problem to divert me from real work (though not so
pressing). `ldd avogadro` shows all the library dependencies to be
satisfied, so at least I know what libs are needed, buta strategy for
finding some symbol that is supposed to be there but isn't eludes me.
Bob W.
On 9/14/13 5:11 PM, Stephen P. Molnar wrote:
That's rather interesting, I wish I could furnish some insight, but
that's not the case.
Let me suggest something, however, try compiling the subversion
version of Pymol 1.6.0. I just compiled that yesterday evening
straight 'out of the box', in Xubuntu 12.04, and it's working!!!!!
Stephen P. Molnar, Ph.D. Life is a
fuzzy set
Foundation for Chemistry Stochastic
and multivariate
www.FoundationForChemistry.com
(614)312-7528 (c)
Skype: smolnar1
*From:*Robert Wohlhueter [mailto:bobwohlhue...@earthlink.net]
*Sent:* Saturday, September 14, 2013 1:28 PM
*To:* avogadro-discuss@lists.sourceforge.net
*Subject:* [Avogadro-Discuss] avogadro-1.1.0 build error
Running Ubuntu 12.10 on an AMD64 machine, I have not been able to get
the "debichem" binary version (current 1.0.3) to work, and so thought
I would try a home-build of v.1.1.0. Cmake seems to find all the
requisite dependencies alright, but after a lot of "make -j2" work
(most not shown below), I get an opaque symbol lookup error (shown
below), which confounds building the binaries.
Can anyone point me to which lib/lib-version might satisfy the missing
symbol?
Thanks,
Bob W.
...
[ 11%] Generating moc_pythontool_p.cxx
[ 11%] Generating libavogadro_de.qm
/usr/bin/lconvert: symbol lookup error: /usr/bin/lconvert: undefined
symbol: _ZN16QCoreApplicationC1ERiPPci
make[2]: *** [libavogadro/src/libavogadro_de.qm] Error 127
make[1]: *** [libavogadro/src/CMakeFiles/avogadro.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 11%] Building CXX object
libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molecule.cpp.o
...
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