I have installed v-1.1.0 in Debian Testing RC3 in a VMware Player. There
were no problems with running Avogadro until I attempted to open the
spectrum of the compound, acetylene run in MOPAC2012.
Here is the run.log (I opened Avogadro in a terminal):
comp@inga:~$ avogadro
"Avogadro version: 1.0.3 Git:
LibAvogadro version: 1.0.3 Git: "
Locale: "en_US"
Libavogadro translations not found.
"System has OpenGL support."
"About to test OpenGL capabilities."
"OpenGL capabilities found: "
"Double Buffering."
"Direct Rendering."
"Antialiasing."
Loading plugins: "/usr/bin/../lib/avogadro/1_0"
Searching for plugins in "/usr/lib/avogadro/1_0/colors"
Searching for plugins in "/usr/lib/avogadro/1_0/engines"
Searching for plugins in "/usr/lib/avogadro/1_0/extensions"
Searching for plugins in "/usr/lib/avogadro/1_0/tools"
Searching for plugins in ""
Loading plugins: "/home/comp/.avogadro/1_0/plugins"
Searching for plugins in ""
Searching for plugins in ""
Searching for plugins in ""
Searching for plugins in ""
Searching for plugins in ""
QStackedLayout::setCurrentWidget: Widget 0x10d35f0 not contained in stack
GLWidget initialisation...
GLSL support enabled, OpenGL 2.0 support confirmed.
GLWidget initialised...
createObjects()
libpng warning: Ignoring attempt to set cHRM RGB triangle with zero area
SpectraDialog::setMolecule: No spectra available!
setOBMol called.
read 1 molecules.
setOBMol called.
Old molecule deleted...
Qt has caught an exception thrown from an event handler. Throwing
exceptions from an event handler is not supported in Qt. You must
reimplement QApplication::notify() and catch all exceptions there.
terminate called after throwing an instance of 'std::out_of_range'
what(): vector::_M_range_check
Aborted
comp@inga:~$
Now, as I am a user (an Organic Chemist by training and experience) the
errors are just so much gibberish.
This problem does not occur in other Linux distributions. At this point I
am running Testing in a VM before upgrading my Tower to Debian v-8.0.
However I would greatly appreciate pointers to the solution of this problem
Thanks in advance,
Stephen P. Molnar, Ph.D. Life is a fuzzy
set
Foundation for Chemistry Stochastic and
multivariate
www.FoundationForChemistry.com
(614)312-7528 (c)
Skype: smolnar1
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