Hi Ron, We did actually fix this issue for the new update that is coming soon. Let me know if you have any issues with your fix and I can give you the updated version of that file.
Thanks, Patrick On Friday, August 21, 2015, Cohen, Ronald <rco...@carnegiescience.edu> wrote: > I think the attached code I edited fixes this problem. > > Ron > --- > Ronald Cohen > Geophysical Laboratory > Carnegie Institution > 5251 Broad Branch Rd., N.W. > Washington, D.C. 20015 > rco...@carnegiescience.edu <javascript:;> > office: 202-478-8937 > skype: ronaldcohen > https://twitter.com/recohen3 > https://www.linkedin.com/profile/view?id=163327727 > > > On Fri, Aug 21, 2015 at 12:08 PM, Cohen, Ronald > <rco...@carnegiescience.edu <javascript:;>> wrote: > > Unfortunately the CLI is not correct! I get: > > > > Warning: "Optimizer::Update: Error loading structure at > > /home/ucfbcoh/XTALOPT/C12H12/200GPa//00003x00051/" > > > > and when I look at that directory I find on the client: > > > > ls /home/ucfbcoh/XTALOPT/C12H12/200GPa//00003x00051/ > > 00003x00051 job.sh structure.state xtal.in > > ucfbcoh@tomcat:~/src/xtalopt2/build$ ls > > /home/ucfbcoh/XTALOPT/C12H12/200GPa//00003x00051/00003x00051/ > > job.sh pwscf.save xtal.in xtal.out > > > > I had fixed this also long ago, but it is back again. It is storing > > one directory down. > > > > Ron > > > > --- > > Ronald Cohen > > Geophysical Laboratory > > Carnegie Institution > > 5251 Broad Branch Rd., N.W. > > Washington, D.C. 20015 > > rco...@carnegiescience.edu <javascript:;> > > office: 202-478-8937 > > skype: ronaldcohen > > https://twitter.com/recohen3 > > https://www.linkedin.com/profile/view?id=163327727 > > > > > > On Fri, Aug 21, 2015 at 1:48 AM, Ronald Cohen > > <rco...@carnegiescience.edu <javascript:;>> wrote: > >> I switched to the CLI ssh and so far no problems! I guess it is a > problem > >> with sshlib. > >> Ron > >> Sent from my iPad > >> > >> On Aug 17, 2015, at 9:41 AM, David Lonie <david.lo...@kitware.com > <javascript:;>> wrote: > >> > >> On Fri, Aug 14, 2015 at 4:35 PM, Cohen, Ronald < > rco...@carnegiescience.edu <javascript:;>> > >> wrote: > >>> > >>> I had fixed this in an earlier version but don't remember how. > >>> Sometimes the connection to the server or nameserver goes down (about > >>> once a day) and I see an error like: > >>> > >>> SSHConnectionLibSSH::isConnected(): server timeout. > >>> SSH error: Failed to resolve hostname legion.rc.ucl.ac.uk (Name or > >>> service not known) > >>> "Cannot connect to ssh server ucfb...@legion.rc.ucl.ac.uk:22" > >>> Warning: "Cannot connect to ssh server" > >> > >> > >> If you're having issues resolving hosts, there's not much that can be > done > >> about that from the XtalOpt side of things. Might be VPN related? > >> > >> Dave > >> > >> > ------------------------------------------------------------------------------ > >> > >> _______________________________________________ > >> Avogadro-Discuss mailing list > >> Avogadro-Discuss@lists.sourceforge.net <javascript:;> > >> https://lists.sourceforge.net/lists/listinfo/avogadro-discuss >
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