Hello,
I am struggling to build Avogadro 1.1.1 from source in Ubuntu 15.10 x86-64.
I run
cmake ../
-DEIGEN2_INCLUDE_DIR=/home/administrator/Downloads/avogadro/eigen-eigen-b23437e61a0
followed by make
Everything seems to compile fine but there is an issue at linking stage:
[100%] Building CXX object
avogadro/src/CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o
Linking CXX executable ../../bin/avogadro
/usr/bin/ld: CMakeFiles/avogadro-app.dir/main.cpp.o: undefined reference to
symbol 'XInitThreads'
/usr/lib/x86_64-linux-gnu/libX11.so.6: error adding symbols: DSO missing
from command line
collect2: error: ld returned 1 exit status
avogadro/src/CMakeFiles/avogadro-app.dir/build.make:1552: recipe for target
'bin/avogadro' failed
make[2]: *** [bin/avogadro] Error 1
CMakeFiles/Makefile2:2925: recipe for target
'avogadro/src/CMakeFiles/avogadro-app.dir/all' failed
make[1]: *** [avogadro/src/CMakeFiles/avogadro-app.dir/all] Error 2
Makefile:136: recipe for target 'all' failed
make: *** [all] Error 2
The reason for compiling from source is that Avogadro depends on
libopenbabel but that conflicts with my OpenBabel 2.3.90 installation.
Best regards,
Miro
--
Edelmiro Moman, PhD
Department of Molecular Medicine
Royal College of Surgeons in Ireland
POSTAL ADDRESS:
Room 5.08
Trinity Biomedical Sciences Institute (TBSI)
Trinity College Dublin (TCD)
152- 160 Pearse St
Dublin 2
IRELAND
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