Personally I think building a qemu virtual machine with a LOT of swap is a
'best answer' of the options you outlined.
 
Other options are to run a re-linking program (I had one at some time, but
it was in Perl, but it worked.  Ran slow, but 
did well at globally getting rid of all duplicate files and replacing them
with hard links.) after other copy methods.
If you would come up with a C version that did not trash virtual storage,
and could use the parallel nature of some
newer machines (threading) and not trash virtual memory like the current
versions do, the community would be grateful.
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