Thanks for the quick fix. I found another one closely related. In one of my BASE1 plugins I had used empty string as the default value for a parameter of type integer. Wise or not, this was allowed in BASE1. In BASE2 this gives an exception when the empty string was tried parsed as an integer.
This is a minor thing, and I fixed my plugin so it is not using empty string as default for a non-string parameter. Vegard > -----Original Message----- > From: [EMAIL PROTECTED] [mailto:basedb-devel- > [EMAIL PROTECTED] On Behalf Of Johan Enell > Sent: Friday, August 03, 2007 3:58 PM > To: BASE dev > Subject: Re: [basedb-devel] Missing values in the parameter table in the > plugin definition file may cause error in BASE2's Base1PluginExecuter. > > I did not know about that difference. I have made the Executer aware and > it sets options to 30 if it is empty. > > /Johan > > > > vegard nygaard wrote: > > When trying to run one of my BASE1 plugins in BASE2 with the > > Base1PluginExecuter I got this error: > > . > > . > > Error message For input string: "" > > Stack trace > > ...at > > > java.lang.NumberFormatException.forInputString(NumberFormatException.java: > 48 > > ) > > ...at java.lang.Integer.parseInt(Integer.java:468) > > ...at java.lang.Integer.(Integer.java:620) > > ...at > > > net.sf.basedb.plugins.Base1PluginExecuter$JobParameter.getPluginParameter( > Ba > > se1PluginExecuter.java:1741) > > ..... > > > > After some searching I found the source of the error to be a missing > value > > in parameter table in the plugin definition file exported from BASE1. > > My file looked something like this > > > > . > > . > > . > > columns position valueType name commonName options > > defaultValue enumOptions removed > > % > > 1 h section imputationvalue 10 parameter 0 > > 2 i imputationvalue Imputationvalue 1 0 > > 3 e strict How strict? 1 > > 1\toption1\t2\toption2 0 > > > > The enum parameter "strict" was missing a value in the "options" column. > All > > my old enum parameters looked like this. But during my debugging I > found > > that If I made a enum parameter today in BASE1 it will get a value of > 30. So > > I guess this has changed in BASE1 since I made the plugin. I could only > find > > this problem with the enum parameter type, but I have not used all > different > > types so it might be on others as well. > > The simple fix to this "bug" is to insert 30 so the line looks like > this: > > > > 3 e strict How strict? 30 1 > > 1\toption1\t2\toption2 0 > > > > Alternatively BASE2 could handle an empty field an insert the proper > value. > > > > Hope I saved someone some hours figuring this out. > > > > I still did not manage to run my plugin though. I ran in to the next > problem > > regarding different names of the fields in BASE1 and BASE2, but there > was > > another post about that. > > > > Best Regards > > Vegard Nygaard > > Software Engineer > > Department of Tumor Biology (Montebello) > > Rikshospitalet-Radiumhospitalet Medical Center 0310 Oslo > > Bioinformatics user support (NMC) > > Phone 0047 22935590 > > > > > > > > ------------------------------------------------------------------------ > - > > This SF.net email is sponsored by: Splunk Inc. > > Still grepping through log files to find problems? Stop. > > Now Search log events and configuration files using AJAX and a browser. > > Download your FREE copy of Splunk now >> http://get.splunk.com/ > > _______________________________________________ > > basedb-devel mailing list > > basedb-devel@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/basedb-devel > > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Splunk Inc. > Still grepping through log files to find problems? Stop. > Now Search log events and configuration files using AJAX and a browser. > Download your FREE copy of Splunk now >> http://get.splunk.com/ > _______________________________________________ > basedb-devel mailing list > basedb-devel@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/basedb-devel ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ basedb-devel mailing list basedb-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/basedb-devel
