Thanks! I'll check it out!
-----Original Message-----
From: [EMAIL PROTECTED] on behalf of Tony Travis
Sent: Tue 12/11/2007 4:53 AM
To: BASE dev
Cc: Ted Liefeld
Subject: Re: [basedb-devel] Open Source utils for sharing array results
McMurry, Andrew J. wrote:
> Greetings:
> I'm tasked with creating extractor APIs for array results
> (CGH/Expression/SNP) in a MIAME compliant format (likely MINIML). I
> figure it is better to use open source tools available rather than build
> from scratch. All the work we do is open source.
>
> We are writing a tool that simply points at a folder and reads each
> MIAME compliant CGH/SNP/or Expression arrays and inserts it into a local
> database so we can query for individual results and do correlation
> studies. I'm guessing this sounds familiar already. How hard would it be
> for me to simply use Base2 as a library to grab a list of results and
> load it into a local db? Since the array results have ALREADY been
> generated, we dont need a full blown LIMS system as nice as the one
> offered by base2.
Hello, Andrew.
I'm part of an EU-funded project NuGO and we use base2. We also use
genePattern from the Broad Institute. We've just been talking to Ted
Liefeld about querying base2 instances from GenePattern in a similar
way. It might be worth having a chat with him about what you are
planning, so we don't duplicate our efforts?
Best wishes,
Ton y.
--
Dr. A.J.Travis, | mailto:[EMAIL PROTECTED]
Rowett Research Institute, | http://www.rri.sari.ac.uk/~ajt
Greenburn Road, Bucksburn, | phone:+44 (0)1224 712751
Aberdeen AB21 9SB, Scotland, UK. | fax:+44 (0)1224 716687
-------------------------------------------------------------------------
SF.Net email is sponsored by:
Check out the new SourceForge.net Marketplace.
It's the best place to buy or sell services for
just about anything Open Source.
http://sourceforge.net/services/buy/index.php
_______________________________________________
basedb-devel mailing list
basedb-devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/basedb-devel
<<winmail.dat>>
------------------------------------------------------------------------- SF.Net email is sponsored by: Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://sourceforge.net/services/buy/index.php
_______________________________________________ basedb-devel mailing list basedb-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/basedb-devel
