On 2014-09-05 12:30, Bob MacCallum wrote: > Hello BASE devs and users, > > I didn't post this to the users list because I'm 99% sure there isn't a > GUI way to add/remove inherited annotations (in our case inheriting > annots from BioSources to Physical Bioassays). But please correct me if > I'm wrong, Nicklas.
There is no GUI for doing batch modifications, you'll have to do it for one item at a time. > We're doing a bit of a spring clean and would like to re-inherit annots > for a few hundred hybs - as a one-off event but we don't really want to > get RSI through the GUI ;-) > > Does anyone have/know of some code that NickH and I could modify for our > purpose (just to save some time). The only place I can think of is the feature that let's you inherit annotations to all raw bioassays in an experiment. Basically it calls AnnotationSet.autoInherit() (http://base.thep.lu.se/browser/tags/3.3/src/core/net/sf/basedb/core/AnnotationSet.java#L869) for each raw bioassay in the experiment and passing in the set of annotation types selected as "experimental factors". It doesn't remove or replace existing inherited annotations. /Nicklas ------------------------------------------------------------------------------ Want excitement? Manually upgrade your production database. When you want reliability, choose Perforce. Perforce version control. Predictably reliable. http://pubads.g.doubleclick.net/gampad/clk?id=157508191&iu=/4140/ostg.clktrk _______________________________________________ basedb-devel mailing list basedb-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/basedb-devel
