| Hi, I would be interested in obtaining that annotation filtering plugin if it is available - I can't see it on the current base downloads page, but I guess thats still being finalised.
regards
Paddy
On 6 Oct 2005, at 09:48, Johan Enell wrote: It is true that the base core doesnt support any way to filter on annotation. But I have written a plugin to do this kind of work.
Due to some hardware problems it is not avalible to download it but if you can wait some days it will be. Or I can just send it to you.
/Johan
On 04/10/05, Carl Troein <[EMAIL PROTECTED]> wrote:
> Anup Parikh wrote:
> > Our lab has decided to use BASE to manage over 5 years of cDNA array
> > data. I have imported over 6000 chips into BASE and now would like to
> > do some analysis using data from samples with specific annotation. I
> > cannot find a way to filter the raw data or even the sample list by
> > sample annotation. Am i missing something or am i going to have to
> > write my own sql queries to search for raw data by sample annotation?
>
> Let me be the first to say that that part of BASE really is
> insufficient for its purpose. But yes, that's the bitter truth
> of it - unless you want to muck about with the rather complex
> and badly documented code that drives the search forms in BASE,
> your only realistic option is to go look in the database yourself.
>
> For what it's worth, it shouldn't be too hard to figure out how
> those tables in the database work.
>
> //Carl
>
> --
> Carl Troein - [EMAIL PROTECTED]
> http://pixelmagic.dyndns.org/~cirdan/
> BASE developer - http://base.thep.lu.se/
>
>
>
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__ Dr Paddy Tighe Associate Professor in Molecular Biology Division of Immunology and Institute of Infection, immunity and Inflammation University Hospital Nottingham NG7 2UH Tel: (44) 115 82 30734 Fax (44) 115 82 30759
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