Hi, Audrey, I have met the same situation before (see discussions around 2004-11-08). At that time my solution is to change [EMAIL PROTECTED] to base@"myservername" (replace with your server name). Carl has some explanation you can read if you are interested. But I am not sure if your case is the same as mine. So you may try and see if it works or not. Good luck. Zhilin (Jaleen)
________________________________ From: [EMAIL PROTECTED] on behalf of Audrey Bihouee Sent: Thu 2/23/2006 3:29 AM To: basedb-users@lists.sourceforge.net Subject: [base] Re: Java Exception on MAGE-ML export Hi Kjell, Thanks for your quick answer. But your proposition doesn't solve my problem. I think that the old version of the driver is also not in the classpath as you suggest. I rename my new version like the old one : "mysql-connector-java-3.0.15-ga-bin.jar" but I always get this message : dirname= /var/BASE_production/data/mageml/0/1/experiment1 stage= all dtdpath= /usr/local/BASE_production/misc/MAGE-ML.dtd Failed to load current driver. java.sql.SQLException: Access denied for user 'base'@'localhost.localdomain' (using password: YES) I check the permissions on this file. It seems ok. And when I take a look on the file magemlExporter.php I can see the good name of the driver. Should I modify something in this file ? Can it be a problem with my base user ? I "GRANT" this user again, but nothing change. Thanks a lot for your answer. Cheers, Audrey > > Hi Audrey, > > The BASE MAGE-ML export coding is no ongoing for full steam, so soon > the code below givinmg you trouble should be obsolete. But I'll try to > giv you a couple of hints to help you by. > > Audrey Bihouee wrote: > >> Hi, >> >> Sine I changed my server, I get a java error when I try to export my >> data in MAGE-ML. >> This is my message : >> >> dirname= /var/BASE_production/data/mageml/0/1/experiment1 >> stage= all >> dtdpath= /usr/local/BASE_production/misc/MAGE-ML.dtd >> Failed to load current driver. >> java.sql.SQLException: Invalid authorization specification message >> from server: "Access denied for user 'base'@'localhost.localdomain' >> (using password: YES)" >> q= >> java.lang.NullPointerException >> at BASEutils.getStatement(BASEutils.java:141) >> at Experiment_BASE.fromBASE(Experiment_BASE.java:40) >> at >> Experiment_package_BASE.getExperiment(Experiment_package_BASE.java:47) >> at exportMAGEML.retrive(exportMAGEML.java:125) >> at exportMAGEML.main(exportMAGEML.java:76) >> created mageobjects >> writeMAGEML >> repair >> java.lang.NullPointerException >> at BASEutils.quickfix1(BASEutils.java:1076) >> at BASEutils.repairMAGEML(BASEutils.java:1035) >> at exportMAGEML.main(exportMAGEML.java:78) >> validate >> error: Attribute "identifier" is required and must be specified for >> element type "MAGE-ML". >> org.xml.sax.SAXParseException: Attribute "identifier" is required and >> must be specified for element type "MAGE-ML". >> at org.apache.xerces.parsers.DOMParser.parse(Unknown Source) >> at org.apache.xerces.jaxp.DocumentBuilderImpl.parse(Unknown Source) >> at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:151) >> at BASEutils.validate(BASEutils.java:1137) >> at exportMAGEML.main(exportMAGEML.java:79) >> >> My version of Mysql is : 4.1.12 and I have >> mysql-connector-java-3.0.15-ga-bin.jar in BASEpath/include/java >> > The first error (failed to load driver) seem to be causing the rest. > See below. > >> >> When I try to update my mysql-connector to 3.1.12-bin.jar I get this >> message : >> >> dirname= /var/BASE_production/data/mageml/0/1/experiment1 >> stage= all >> dtdpath= /usr/local/BASE_production/misc/MAGE-ML.dtd >> Failed to load current driver. >> java.lang.ClassNotFoundException: org.gjt.mm.mysql.Driver >> >> > This is because your new driver jar is not explicitly in the classpath > of the jvm (set in a script before starting the java code). A quick > hack for now would be to rename your new driver to the same name as > the old driver jar (and keep a copy of the old one around of course). > > > Good look! > > Kjell ;^) > -- ************************* Audrey Bihouee Plate-forme transcriptome - OUEST-genopole INSERM U533 - IFR 26 1 Rue Gaston Veil- BP 53508 44 035 NANTES FRANCE Tel : (33) 2 40 41 29 86 Fax : (33) 2 40 41 29 50 http://cardioserve.nantes.inserm.fr/ptf-puce ************************* ------------------------------------------------------- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720&dat=121642 _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
<<winmail.dat>>
