Hi there,
I wonder if somebody has a plugin that merges data sets (BioAssay) from
different array design together. Let me be a bit more specific. We have
array designs (print ourselves) that are very similar but yet a bit
different (eg the order in which plates have been printed, or some
plates are missing in one design). If I am correct, BASE matches up
spots based on their position when e.g plotting scatter plots to
compare signals in hyb 1to those in hyb 2.
When I created the array design, I made sure that the features point to
the same reporters. What we d like to do is to compare results obtained
for the same reporter on the different designs. Note that here reporter
= probe, ie we want to compare stuff that are really the same, just
spotted at different places.
I was thinking about a plug-in that would :
1. pick arbitrarily one of the 2 array design as a reference
2. convert the other array design to this reference
3. Only spots (based on reporter id matching) that are common would be
kept, the other ones would be filtered out
4. The resulting value of merged spots would be customizable, e.g the
mean, or the highest or whatever
5. Keeps relation to parent BioAssay
Or something similar.
Any suggestions?
Cheers
Charles
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