Hi all, Following Charles' suggestion below I have run php -i | grep max and the output looks like this: log_errors_max_len => 1024 => 1024 max_execution_time => 0 => 30 max_input_time => 60 => 60 post_max_size => 200M => 200M upload_max_filesize => 200M => 200M mysql.max_links => Unlimited => Unlimited mysql.max_persistent => Unlimited => Unlimited session.gc_maxlifetime => 1440 => 1440
post_max and upload_max are set sensibly so it seems I did change the right file. There was a second suggestion about creating a phpinfo file from Bob MacCallum. Unfortunately I couldn't do this because my webmail provider eats code so the suggested contents of the file were missing. Bob if you get this could you re-send that info to [EMAIL PROTECTED] If any of the list administrators are reading how do I change my subscribed e-mail address. I'm going to ditch this one it just isn't up to the job. Do I just send an unsubcribe message from this one and then subscribe the other address ([EMAIL PROTECTED]). Anybody else got any suggestions about the upload size limit problem? regards, Richard On Wed, 24 May 2006 09:29 , [EMAIL PROTECTED] sent: >Send basedb-users mailing list submissions to > basedb-users@lists.sourceforge.net > >To subscribe or unsubscribe via the World Wide Web, visit > https://lists.sourceforge.net/lists/listinfo/basedb-users >or, via email, send a message with subject or body 'help' to > [EMAIL PROTECTED] > >You can reach the person managing the list at > [EMAIL PROTECTED] > >When replying, please edit your Subject line so it is more specific >than "Re: Contents of basedb-users digest..." > > >Today's Topics: > > 1. upload file size limit ([EMAIL PROTECTED]) > 2. Re: upload file size limit (charles girardot) > 3. Re: upload file size limit (Bob MacCallum) > 4. baseftpd revisited / HTTPS/SSL question (Bob MacCallum) > 5. base2 raw data import error (David Zhao) > >--__--__-- > >Message: 1 >From: [EMAIL PROTECTED]> >To: basedb-users@lists.sourceforge.net >Date: Wed, 24 May 2006 14:49:09 +0100 >Subject: [base] upload file size limit >Reply-To: basedb-users@lists.sourceforge.net > >Hi all, > >I'm having a problem with upload file size limits in base-1.2.17. Exactly the >same problem was posted about 10 days ago by David Zhao but I never saw a >solution. Basically, my system is insisting that the file upload limit is 8Mb. >I've changed post-max-size and upload_max_filesize in php.ini and restarted the >apache web server as recommended on several posts on this list. I also tried >restarting Base. None of this has worked, Base is still showing an 8Mb upload >limit. Does anyone have any suggestions? I was wondering if it might be some >odd >permissions settings somewhere but the user in question has upload permissions >and Base/apache both run as the same user so I'm baffled. > >All suggestions gratefully recieved. >regards, >Richard > > > > >---- - Madasafish - Voted Best Heavy Consumer Broadband Provider in the 2006 Internet Industry Awards http://www.madasafish.com/ > > >--__--__-- > >Message: 2 >From: charles girardot [EMAIL PROTECTED]> >Subject: Re: [base] upload file size limit >Date: Wed, 24 May 2006 16:01:15 +0200 >To: basedb-users@lists.sourceforge.net >Reply-To: basedb-users@lists.sourceforge.net > >Hi > >Maybe you can check whether you changed it in the proper php conf file >by typing : > >php -i | grep max > >you should see your changes like >... >post_max_size200M >class="v">200M >upload_max_filesize200M >class="v">200M >... > >Hope this helps > >Charles > > >On 24 mai 06, at 15:49, [EMAIL PROTECTED]> wrote: > >> Hi all, >> >> I'm having a problem with upload file size limits in base-1.2.17. >> Exactly the >> same problem was posted about 10 days ago by David Zhao but I never >> saw a >> solution. Basically, my system is insisting that the file upload limit >> is 8Mb. >> I've changed post-max-size and upload_max_filesize in php.ini and >> restarted the >> apache web server as recommended on several posts on this list. I also >> tried >> restarting Base. None of this has worked, Base is still showing an 8Mb >> upload >> limit. Does anyone have any suggestions? I was wondering if it might >> be some odd >> permissions settings somewhere but the user in question has upload >> permissions >> and Base/apache both run as the same user so I'm baffled. >> >> All suggestions gratefully recieved. >> regards, >> Richard >> >> >> >> >> ---- - Madasafish - Voted Best Heavy Consumer Broadband Provider in >> the 2006 Internet Industry Awards http://www.madasafish.com/ >> >> >> ------------------------------------------------------- >> All the advantages of Linux Managed Hosting--Without the Cost and Risk! >> Fully trained technicians. The highest number of Red Hat >> certifications in >> the hosting industry. Fanatical Support. Click to learn more >> http://sel.as-us.falkag.net/sel? >> cmd=lnk&kid=107521&bid=248729&dat=121642 >> _______________________________________________ >> The BASE general discussion mailing list >> basedb-users@lists.sourceforge.net >> unsubscribe: send a mail with subject "unsubscribe" to >> [EMAIL PROTECTED] >> >Best regards, > >Charles > >===================== >Charles Girardot >EMBL >C. Boulin and E. Furlong Groups >Tel: +49-(0)6221-387-8426 (or 8516) >Fax: +49-(0)6221-387-8166 >Email: [EMAIL PROTECTED] > >Room 602 >Meyerhofstrasse 1 >D-69117 Heidelberg >Germany > > > >--__--__-- > >Message: 3 >From: Bob MacCallum [EMAIL PROTECTED]> >Date: Wed, 24 May 2006 15:10:05 +0100 >To: basedb-users@lists.sourceforge.net >Subject: Re: [base] upload file size limit >Reply-To: basedb-users@lists.sourceforge.net > > >and to check what's actually running from Apache >create the following file: /www/phpinfo.php >with contents: > > > > > >then view the (nicely tabulated) results with >your web browser. > > > > >charles girardot writes: > > Hi > > > > Maybe you can check whether you changed it in the proper php conf file > > by typing : > > > > php -i | grep max > > > > you should see your changes like > > ... > > post_max_size200M > > class="v">200M > > upload_max_filesize200M > > class="v">200M > > ... > > > > Hope this helps > > > > Charles > > > > > > On 24 mai 06, at 15:49, [EMAIL PROTECTED]> wrote: > > > > > Hi all, > > > > > > I'm having a problem with upload file size limits in base-1.2.17. > > > Exactly the > > > same problem was posted about 10 days ago by David Zhao but I never > > > saw a > > > solution. Basically, my system is insisting that the file upload limit > > > is 8Mb. > > > I've changed post-max-size and upload_max_filesize in php.ini and > > > restarted the > > > apache web server as recommended on several posts on this list. I also > > > tried > > > restarting Base. None of this has worked, Base is still showing an 8Mb > > > upload > > > limit. Does anyone have any suggestions? I was wondering if it might > > > be some odd > > > permissions settings somewhere but the user in question has upload > > > permissions > > > and Base/apache both run as the same user so I'm baffled. > > > > > > All suggestions gratefully recieved. > > > regards, > > > Richard > > > > > > > > > > > > > > > ---- - Madasafish - Voted Best Heavy Consumer Broadband Provider in > > > the 2006 Internet Industry Awards http://www.madasafish.com/ > > > > > > > > > ------------------------------------------------------- > > > All the advantages of Linux Managed Hosting--Without the Cost and Risk! > > > Fully trained technicians. The highest number of Red Hat > > > certifications in > > > the hosting industry. Fanatical Support. Click to learn more > > > http://sel.as-us.falkag.net/sel? > > > cmd=lnk&kid=107521&bid=248729&dat=121642 > > > _______________________________________________ > > > The BASE general discussion mailing list > > > basedb-users@lists.sourceforge.net > > > unsubscribe: send a mail with subject "unsubscribe" to > > > [EMAIL PROTECTED] > > > > > Best regards, > > > > Charles > > > > ===================== > > Charles Girardot > > EMBL > > C. Boulin and E. Furlong Groups > > Tel: +49-(0)6221-387-8426 (or 8516) > > Fax: +49-(0)6221-387-8166 > > Email: [EMAIL PROTECTED] > > > > Room 602 > > Meyerhofstrasse 1 > > D-69117 Heidelberg > > Germany > > > > > > > > ------------------------------------------------------- > > All the advantages of Linux Managed Hosting--Without the Cost and Risk! > > Fully trained technicians. The highest number of Red Hat certifications in > > the hosting industry. Fanatical Support. Click to learn more > > http://sel.as-us.falkag.net/sel\?cmd=lnk&kid=107521&bid=248729&dat=121642 > > _______________________________________________ > > The BASE general discussion mailing list > > basedb-users@lists.sourceforge.net > > unsubscribe: send a mail with subject "unsubscribe" to > > [EMAIL PROTECTED] > >-- >Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups | >Division of Cell and Molecular Biology | Imperial College London | >Phone +442075941945 | Email [EMAIL PROTECTED] > > >--__--__-- > >Message: 4 >From: Bob MacCallum [EMAIL PROTECTED]> >Date: Wed, 24 May 2006 15:34:36 +0100 >To: basedb-users@lists.sourceforge.net >Subject: [base] baseftpd revisited / HTTPS/SSL question >Reply-To: basedb-users@lists.sourceforge.net > > >Hi, > >As usual I have two topics... > >I was looking into baseftpd and running it through an SSH tunnel (as suggested >in the BASE installation docs), but found that FTP (of any kind) won't work >through a single forwarded port - it needs to open up another randomly >assigned data port - and that won't go through our firewalls. Even in passive >mode. > >So I figured out/hacked a solution in ftpd.inc.php which forces the data >channel onto a specific port, which stays open throughout the session. The >client can set up two SSH tunnels easily enough, before starting their ftp >client in passive mode. > >I also commented out the quota handling in ftpd.inc.php which seemed to be >broken (calls to nonexistent functions). > >I did introduce at least one bug, however - the connection freezes during the >command following a failed ls, cd or get... I've looked and looked and >debugged and debugged and can't seem to find the problem... > >So get in touch if you want to try this hacked version of baseftpd... > >-- > >Since we are planning to run a public BASE server, it would be nice >to run it over a secure connection. Does anyone have experience with >BASE over HTTPS/SSL that they have time to share? > >cheers, > >Bob. > > > >-- >Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups | >Division of Cell and Molecular Biology | Imperial College London | >Phone +442075941945 | Email [EMAIL PROTECTED] > > >--__--__-- > >Message: 5 >Date: Wed, 24 May 2006 09:28:46 -0700 >From: "David Zhao" [EMAIL PROTECTED]> >To: basedb-users@lists.sourceforge.net >Subject: [base] base2 raw data import error >Reply-To: basedb-users@lists.sourceforge.net > >------=_Part_22653_21299583.1148488126520 >Content-Type: text/plain; charset=ISO-8859-1; format=flowed >Content-Transfer-Encoding: quoted-printable >Content-Disposition: inline > >Hi there, > >I've configured a plugin for agilent raw import: > >blockColumnMapping FeatureNum > >columnColumnMapping Column > >dataFooterRegexp > >dataHeaderRegexp >^FEATURES\tFeatureNum\tRow\tCol\tchr_coord\taccessions\tProbeUID\tControlTy= >pe\tProbeName\tGeneName\tSystematicName\tDescription\tPo >sitionX\tPositionY\tLogRatio\tLogRatioError\tPValueLogRatio\tgSurrogateUsed= >\trSurrogateUsed\tgIsFound\trIsFound\tgProcessedSignal\trProcessedSignal\tg= >ProcessedSigError\trProcessedSigError\tgNumPixOLHi\trNumPixOLHi\tgNumPixOLL= >o\trNumPixOLLo\tgNumPix\trNumP >i >x\tgMeanSignal\trMeanSignal\tgMedianSignal\trMedianSignal\tgPixSDev\trPixSD= >ev\tgBGNumPix\trBGNumPix\tgBGMeanSignal\trBGMeanSignal\tgBGMedianSignal\trB= >GMedianSignal\tgBGPixSDev\trBGPixSDev\tgNumSatPix\trNumSatPix\tgIsSaturated= >\trIsSaturated\tPixCorrelation\ >tBGPixCorrelation\tgIsFeatNonUnifOL\trIsFeatNonUnifOL\tgIsBGNonUnifOL\trIsB= >GNonUnifOL\tgIsFeatPopnOL\trIsFeatPopnOL\tgIsBGPopnOL\trIsBGPopnOL\tIsManua= >lFlag\tgBGSubSignal\trBGSubSignal\tgBGSubSigError\trBGSubSigError\tBGSubSig= >Correlation\tgIsPosAndSignif\t >r >IsPosAndSignif\tgPValFeatEqBG\trPValFeatEqBG\tgNumBGUsed\trNumBGUsed\tgIsWe= >llAboveBG\trIsWellAboveBG\tgBGUsed\trBGUsed\tgBGSDUsed\trBGSDUsed\tIsNormal= >ization\tgDyeNormSignal\trDyeNormSignal\tgDyeNormError\trDyeNormError\tDyeN= >ormCorrelation\tErrorModel\txD >e >v\tgSpatialDetrendIsInFilteredSet\trSpatialDetrendIsInFilteredSet\tgSpatial= >DetrendSurfaceValue\trSpatialDetrendSurfaceValue > >dataSplitterRegexp \t > >headerRegexp > >ignoreRegexp > >maxDataColumns > >metaGridXColumnMapping > >metaGridYColumnMapping > >minDataColumns > >propertyMapping.BGPixCorrelation BGPixCorrelation > >propertyMapping.BGSubSigCorrelation BGSubSigCorrelation > >propertyMapping.DyeNormCorrelation DyeNormCorrelation > >propertyMapping.ErrorModel ErrorModel > >propertyMapping.IsManualFlag IsManualFlag > >propertyMapping.IsNormalization IsNormalization > >propertyMapping.LogRatio LogRatio > >propertyMapping.PValueLogRatio PValueLogRatio > >propertyMapping.PixCorrelation PixCorrelation > >propertyMapping.gBGMeanSignal gBGMeanSignal > >propertyMapping.gBGMedianSignal gBGMedianSignal > >propertyMapping.gBGNumPix gBGNumPix > >propertyMapping.gBGSubSignal gBGSubSignal > >propertyMapping.gBGUsed gBGUsed > >propertyMapping.gDyeNormSignal gDyeNormSignal > >propertyMapping.gIsBGNonUnifOL gIsBGNonUnifOL > >propertyMapping.gIsBGPopnOL gIsBGPopnOL > >propertyMapping.gIsFeatNonUnifOL gIsFeatNonUnifOL > >propertyMapping.gIsFeatPopnOL gIsFeatPopnOL > >propertyMapping.gIsFound gIsFound > >propertyMapping.gIsPosAndSignif gIsPosAndSignif > >propertyMapping.gIsSaturated gIsSaturated > >propertyMapping.gIsWellAboveBG gIsWellAboveBG > >propertyMapping.gMeanSignal gMeanSignal > >propertyMapping.gMedianSignal gMedianSignal > >propertyMapping.gNumBGUsed gNumBGUsed > >propertyMapping.gNumPix gNumPix > >propertyMapping.gNumPixOLHi gNumPixOLHi > >propertyMapping.gNumPixOLLo gNumPixOLLo > >propertyMapping.gNumSatPix gNumSatPix > >propertyMapping.gPValFeatEqBG gPValFeatEqBG > >propertyMapping.gProcessedSignal gProcessedSignal > >propertyMapping.gSpatialDetrendIsInFilteredSet >gSpatialDetrendIsInFilteredSet > >propertyMapping.gSpatialDetrendSurfaceValue gSpatialDetrendSurfaceValue > >propertyMapping.gSurrogateUsed gSurrogateUsed > >propertyMapping.rBGMeanSignal rBGMeanSignal > >propertyMapping.rBGMedianSignal rBGMedianSignal > >propertyMapping.rBGNumPix rBGNumPix > >propertyMapping.rBGSubSignal rBGSubSignal > >propertyMapping.rBGUsed rBGUsed > >propertyMapping.rDyeNormSignal rDyeNormSignal > >propertyMapping.rIsBGNonUnifOL rIsBGNonUnifOL > >propertyMapping.rIsBGPopnOL rIsBGPopnOL > >propertyMapping.rIsFeatNonUnifOL rIsFeatNonUnifOL > >propertyMapping.rIsFeatPopnOL rIsFeatPopnOL > >propertyMapping.rIsFound rIsFound > >propertyMapping.rIsPosAndSignif rIsPosAndSignif > >propertyMapping.rIsSaturated rIsSaturated > >propertyMapping.rIsWellAboveBG rIsWellAboveBG > >propertyMapping.rMeanSignal rMeanSignal > >propertyMapping.rMedianSignal rMedianSignal > >propertyMapping.rNumBGUsed rNumBGUsed > >propertyMapping.rNumPix rNumPix > >propertyMapping.rNumPixOLHi rNumPixOLHi > >propertyMapping.rNumPixOLLo rNumPixOLLo > >propertyMapping.rNumSatPix rNumSatPix > >propertyMapping.rPValFeatEqBG rPValFeatEqBG > >propertyMapping.rProcessedSignal rProcessedSignal > >propertyMapping.rSpatialDetrendIsInFilteredSet >rSpatialDetrendIsInFilteredSet > >propertyMapping.rSpatialDetrendSurfaceValue rSpatialDetrendSurfaceValue > >propertyMapping.rSurrogateUsed rSurrogateUsed > >propertyMapping.xDev xDev > >rawDataType agilent > >reporterIdColumnMapping ProbeName > >rowColumnMapping Row > >trimQuotes true > >xColumnMapping > >yColumnMapping > >But when I import a typical Agilent Feature Extraction output raw file, I >got an import error showing below. (data starts on line11, and line10 is >Data header). > >Please help, thanks very much! > >David > > > > > > > >AbstractFlatFileImporter.java:399)* > >AbstractFlatFileImporter.java:312)* > > > > > >) > > > > > > >RawDataFlatFileImporter.java:411)* > >AbstractFlatFileImporter.java:395)* > > > > > > > > > > > > > >------=_Part_22653_21299583.1148488126520 >Content-Type: text/html; charset=ISO-8859-1 >Content-Transfer-Encoding: quoted-printable >Content-Disposition: inline > > > >">Hi=20 >there, > >">I've configured a=20 >plugin for agilent raw import: > >">blockColumnMapping FeatureNum >> > >">columnColumnMapping Column > >">dataFooterRegexp=20 > > >">dataHeaderRegexp=20 > =20 >^FEATURES\tFeatureNum\tRow\tCol\tchr_coord\taccessions\tProbeUID\tControlTy= >pe\tProbeName\tGeneName\tSystematicName\tDescription\tPo >=3D"Courier New" size=3D"2">sitionX\tPositionY\tLogRatio\tLogRatioError\tPV= >alueLogRatio\tgSurrogateUsed\trSurrogateUsed\tgIsFound\trIsFound\tgProcesse= >dSignal\trProcessedSignal\tgProcessedSigError\trProcessedSigError\tgNumPixO= >LHi\trNumPixOLHi\tgNumPixOLLo\trNumPixOLLo\tgNumPix\trNumP >i >New" size=3D"2">x\tgMeanSignal\trMeanSignal\tgMedianSignal\trMedianSignal\t= >gPixSDev\trPixSDev\tgBGNumPix\trBGNumPix\tgBGMeanSignal\trBGMeanSignal\tgBG= >MedianSignal\trBGMedianSignal\tgBGPixSDev\trBGPixSDev\tgNumSatPix\trNumSatP= >ix\tgIsSaturated\trIsSaturated\tPixCorrelation\ >tBGPixCorrelation\tgIsFeatNonU= >nifOL\trIsFeatNonUnifOL\tgIsBGNonUnifOL\trIsBGNonUnifOL\tgIsFeatPopnOL\trIs= >FeatPopnOL\tgIsBGPopnOL\trIsBGPopnOL\tIsManualFlag\tgBGSubSignal\trBGSubSig= >nal\tgBGSubSigError\trBGSubSigError\tBGSubSigCorrelation\tgIsPosAndSignif\t >r >New" size=3D"2">IsPosAndSignif\tgPValFeatEqBG\trPValFeatEqBG\tgNumBGUsed\tr= >NumBGUsed\tgIsWellAboveBG\trIsWellAboveBG\tgBGUsed\trBGUsed\tgBGSDUsed\trBG= >SDUsed\tIsNormalization\tgDyeNormSignal\trDyeNormSignal\tgDyeNormError\trDy= >eNormError\tDyeNormCorrelation\tErrorModel\txD >e >New" size=3D"2">v\tgSpatialDetrendIsInFilteredSet\trSpatialDetrendIsInFilte= >redSet\tgSpatialDetrendSurfaceValue\trSpatialDetrendSurfaceValue >an> > > >">dataSplitterRegexp \t > >">headerRegexp =20 > > >">ignoreRegexp =20 > > >">maxDataColumns =20 > > >">metaGridXColumnMapping > >">metaGridYColumnMapping > >">minDataColumns = > > >">propertyMapping.BGPixCorrelation =20 >BGPixCorrelation > >">propertyMapping.BGSubSigCorrelation =20 >BGSubSigCorrelation > >">propertyMapping.DyeNormCorrelation =20 >DyeNormCorrelation > >">propertyMapping.ErrorModel ErrorModel >an> > >">propertyMapping.IsManualFlag IsManualFlag > >">propertyMapping.IsNormalization = >; IsNormalization > >">propertyMapping.LogRatio LogRatio >ont> > >">propertyMapping.PValueLogRatio PValueLogRatio > >">propertyMapping.PixCorrelation PixCorrelation > >">propertyMapping.gBGMeanSignal gBGMeanSignal > >">propertyMapping.gBGMedianSignal = >; gBGMedianSignal >> > >">propertyMapping.gBGNumPix gBGNumPix= > > >">propertyMapping.gBGSubSignal gBGSubSignal > >">propertyMapping.gBGUsed gBGUse= >d > >">propertyMapping.gDyeNormSignal gDyeNormSignal > >">propertyMapping.gIsBGNonUnifOL gIsBGNonUnifOL > >">propertyMapping.gIsBGPopnOL gIsB >ourier New" size=3D"2">GPopnOL > >">propertyMapping.gIsFeatNonUnifOL =20 >gIsFeatNonUnifOL > >">propertyMapping.gIsFeatPopnOL gIsFeatPopnOL > >">propertyMapping.gIsFound gIsFound >ont> > >">propertyMapping.gIsPosAndSignif = >; gIsPosAndSignif > >">propertyMapping.gIsSaturated gIsSaturated > >">propertyMapping.gIsWellAbove= >BG =20 >gIsWellAboveBG > >">propertyMapping.gMeanSignal gMeanSignal >/p> > >">propertyMapping.gMedianSignal gMedianSignal > >">propertyMapping.gNumBGUsed gNumBGUsed >an> > >">propertyMapping.gNumPix gNumPi= >x > >">propertyMapping.gNumPixOLHi gNumPixOLHi >/p> > >">propertyMapping.gNumPixOLLo gNumPi >"Courier New" size=3D"2">xOLLo > >">propertyMapping.gNumSatPix gNumSatPix >an> > >">propertyMapping.gPValFeatEqBG gPValFeatEqBG > >">propertyMapping.gProcessedSignal =20 >gProcessedSignal > >">propertyMapping.gSpatialDetrendIsInFilteredSet =20 >gSpatialDetrendIsInFilteredSet > >">propertyMapping.gSpatialDetrendSurfaceValue =20 >gSpatialDetrendSurfaceValue > >">propertyMapping.gSurrogateUsed gSurrogateUsed > >">propertyMapping.rBGMeanSignal rBGMeanSignal > >">propertyMapping.rBGMedianSignal = >; rBGMedianSignal > >">propertyMapping.rBGNumPix rBGNumPix= > > >">propertyMapping.rBGSubSignal= > =20 >rBGSubSignal > >">propertyMapping.rBGUsed rBGUse= >d > >">propertyMapping.rDyeNormSignal rDyeNormSignal > >">propertyMapping.rIsBGNonUnifOL rIsBGNonUnifOL > >">propertyMapping.rIsBGPopnOL rIsBGPopnOL >/p> > >">propertyMapping.rIsFeatNonUnifOL =20 >rIsFeatNonUnifOL > >">propertyMapping.rIsFeatPopnOL rIsFeatPopnOL > >">propertyMapping.rIsFound rIsFound >ont> > >">propertyMapping.rIsPosAndSignif = >; rIsPosAndSignif > >">propertyMapping.rIsSaturated rIsSaturated > >">propertyMapping.rIsWellAboveBG rIsWellAboveBG > >">propertyMapping.rMeanSignal rMeanSi >=3D"Courier New" size=3D"2">gnal > >">propertyMapping.rMedianSignal rMedianSignal > >">propertyMapping.rNumBGUsed rNumBGUsed >an> > >">propertyMapping.rNumPix rNumPi= >x > >">propertyMapping.rNumPixOLHi rNumPixOLHi >/p> > >">propertyMapping.rNumPixOLLo rNumPixOLLo >/p> > >">propertyMapping.rNumSatPix rNumSatPix >an> > >">propertyMapping.rPValFeatEqB= >G =20 >rPValFeatEqBG > >">propertyMapping.rProcessedSignal =20 >rProcessedSignal > >">propertyMapping.rSpatialDetrendIsInFilteredSet =20 >rSpatialDetrendIsInFilteredSet > >">propertyMapping.rSpatialDetrendSurfaceValue =20 >rSpatialDetrendSurfaceValue > >">propertyMapping.rSurrogateUsed rSurrogateUsed > >">propertyMapping.xDev xDev > >">rawDataType =20 >agilent > >">reporterIdColumnMapping ProbeN= >ame > >">rowColumnMapping=20 > Row > >">trimQuotes =20 >true > >">xColumnMapping =20 > > >">yColumnMapping > >">But when I import=20 >a typical Agilent Feature Extractio >=3D"2">n=20 >output raw file, I got >ier New" size=3D"2"> an import error showing below. (data starts on line11 >/font>, and line10 is Data header). >font> > > >">Please help,=20 >thanks very much! > >">David > >=3D"2">View job --=20 >Import raw bioassay > >=3D"2">Name Import=20 >raw bioassay > >=3D"2">Description=20 > > >=3D"2">Priority=20 > 4 (1 =3D highest, 10 =3D lowest) >> > >=3D"2">Status Error:=20 >Import failed on line 11: For input string: "LogRatio"= > > >=3D"2">BaseException:=20 >Import failed on line 11: For input string: "LogRatio"= > > >=3D"2">at=20 >net.sf.basedb.plugins.AbstractFlatFileImporter.doImport(AbstractFlatFileImp= >orter.java:399) > >=3D"2">at=20 >net.sf.basedb.plugins.Abstract= >FlatFileImporter.run(AbstractFlatFileImporter.java:312) >p> > >=3D"2">at=20 >PluginExecutionRequest.invoke(PluginExecutionRequest.java:84) >pan> > >=3D"2">at=20 >InternalJobQueue$JobRunner.run(InternalJobQueue.java:445)= > > >=3D"2">at=20 >java.lang.Thread.run(Thread.java:595) > >=3D"2">Caused by:=20 >java.lang.NumberFormatExceptio= >n: For=20 >input string: "LogRatio" > >=3D"2">at=20 >sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:1224) >ont> > >=3D"2">at=20 >java.lang.Float.valueOf(Float.java:360) > >=3D"2">at=20 >java.lang.Float.<init>(Float.java:461) > >=3D"2">at=20 >org.hibernate.type.FloatType.fromStringVa >size=3D"2">lue(FloatType.java:51) > >=3D"2">at=20 >Type.parseString(Type.java:357) > >=3D"2">at=20 >ExtendedProperty.parseString(ExtendedProperty.java:153) >p> > >=3D"2">at=20 >net.sf.basedb.plugins.RawDataFlatFileImporter.handleData(RawDataFlatFileImp= >orter.java:411) > >=3D"2">at=20 >net.sf.basedb.plugins.AbstractFlatFileImporter.doImport(AbstractFlatFileImp= >orter.java:395) > >=3D"2">... 4=20 >more > >=3D"2">Percent=20 >complete > >=3D"2"> > &nb= >sp; =20 >100% > >=3D"2">Created=20 > 2006-05-24 09:15 >n> > >=3D"2">Started=20 > 2006-05-24 09:15 >n> > >=3D"2">Ended =20 >2006-05-24 09:15 > >=3D"2">Server =20 >http://lin2.activx.com";>lin2.activx.com >> > >=3D"2">Plugin Text=20 >file raw data=20 >importer > >=3D"2">Configuration=20 > agilent raw data > >=3D"2">file =20 >/home/US22502657_251197832125_S01_A01.txt > >=3D"2">rawBioAssay=20 > R3_20050822 > >span> > >------=_Part_22653_21299583.1148488126520-- > > > >--__--__-- > >_______________________________________________ >basedb-users mailing list >basedb-users@lists.sourceforge.net >https://lists.sourceforge.net/lists/listinfo/basedb-users > > >End of basedb-users Digest ---- - Madasafish - Voted Best Heavy Consumer Broadband Provider in the 2006 Internet Industry Awards http://www.madasafish.com/ ------------------------------------------------------- All the advantages of Linux Managed Hosting--Without the Cost and Risk! Fully trained technicians. The highest number of Red Hat certifications in the hosting industry. Fanatical Support. Click to learn more http://sel.as-us.falkag.net/sel?cmd=lnk&kid=107521&bid=248729&dat=121642 _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
