Hello,
how can I link (= associate) a particular labeled extract that was
used in a multi-color hybridization to a particular intensity column
in the raw bioassays (or particular channel in the experiment) ?
I have an 8-channel raw data type properly defined in raw-data-types.xml
and the corresponding table created in mysql. I have created a hybridization
with 8 labeled extracts (each labeled with distinct dye). Then, I have
a scan and a raw bioassay linked to that hybridization. The raw data file
that I am importing into that raw bioassay has 8 intensity columns, each
corresponding to one channel. How do I associate the intensity columns
in that raw bioassay to labeled extracts used in the hybridization? Also,
how do I associate the labeled extracts to the channels in the experiment?
I would like to see, e.g. "labeled extract ID (dye)" by the corresponding
intensity columns or channels.
Thanks for your advice.
Petr
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