Hi, I have been investigating this further. The problem appears to be during the execution of baseFileReformatter. The header of my input file for this looks like:
BASEfile section reformatter format normalBASEfile nanString numericFields intensity1 intensity2 fieldCount 2 assayCount 20 count 2845 columns position reporter reporterId removeColumns % etc Can anyone see why there would be a problem? > I am moving over from BASE 1.2.10 (Solaris 9) to 1.2.17 (Fedora) and > ultimately to BASE2. At the moment I can't seem to run some of the plug-ins > in 1.2.17 though they work fine on 1.2.10. For example: > > On running MGH: avg channel intensity, I get the error: > > Plug-in output Failed to prepare job XXXX: Unable to convert BASEfile > into the 'normal' format: Reading from input file failed: Bad section > specification > > Where XXXX is the job id. > > Is there something I have to do further to get these to work? > > Thanks for any help, > > Thanks again, Steve ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys - and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
