Re: [base] Réplicates in base 2

[Johan Enell]

I think I should answer this. There is still some features in the Base1PluginExecuter to be done. It tries to simulate the plug-in execution of BASE 1.2.17 and that process was a little bit more complex then I first thought. Q1? -Why 3 Bioassay sets are created by this plugin ? (I clicked only 1 time) A1- There is only one BioAssaySet created, "Something after". "Something---" is you transformation and JE_nbrOfElemets is a extra value created by the plug-in. Q2? -Why those strange names: Something---, Something after (OK, it is not a serious pb, except that I'm afraid it is the sign of something wong in the process) A2- The names is because the plug-in (Base1PluginExecuter) is still in development. It will of course change to be a useful name instead. Q3? -Why, in the Bioassay set Something after, are there 77148 Spots and 0 Reporters? A3- This is a known issue and of course it's wrong and will be corrected. Q4? -Why an extra value called JE_nbrOfElements is created as a last stuff ? A3- This is an extra value created by the plug-in. This value is the number of spots the new merged spot was created from. /Johan Emmanuel Courcelle wrote: I don't know much about the BASE 1 plugins. What do you think is buggy? /Nicklas Sorry, the html  copy-and-paste  was not clear; here is a hand-made copy-and-paste: Name                                                           Spots/Values                        Reporters                         Plugin Median FG                                                                                                                                                                  Formula intensity calculator     Mediane                                                                80640                                          6229        Filter: raw('flags') == 0                                                                                                                                       JEP filter plugin           Filtered Mediane                                            77148                                          6158               Normalization: Median ratio                                                                                                                         Normalization: Median ratio                      Filtered normalized Mediane              77148                                          6158                           Something---                                                                                                             Base1PluginExecuter                                Something after             77148                                  0                                     JE_nbrOfElements     77148                                                                          Base1PluginExecuter So, the things I don't understand (buggy or not buggy, that is the question): -Why 3 Bioassay sets are created by this plugin ? (I clicked only 1 time) -Why those strange names: Something---, Something after (OK, it is not a serious pb, except that I'm afraid it is the sign of something wong in the process) -Why, in the Bioassay set Something after, are there 77148 Spots and 0 Reporters ? -Why an extra value called JE_nbrOfElements is created as a last stuff ? -- Emmanuel COURCELLE [EMAIL PROTECTED] L.I.P.M. (UMR CNRS-INRA 2594/441) tel (33) 5-61-28-54-50 B.P.52627 - 31326 CASTANET TOLOSAN Cedex - FRANCE ------ ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys - and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]

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