Hello,
I'm trying to import a GPR file and had some problems. I have submitted the
bug to the base ticketing system. The problem comes from assigning incorrect
wavelengths to the dyes CY5 and CY3 (view opened ticket #467). In the bug
descriptions I also submit the correct parameters that need to be changed.
Well, now the the GPR importer is properly working I need to fix another
issue. In some cases the "log ratio (...)" field has some values that are
named "error". This come from the fact that when the background noise is
higher than the intensity of the expressed oligo it is not possible to
compute the log ration so genepix will return "error" as value for this
specific field.
Well, base is returning an error when trying to import such values. Could
that be fixed ?? I want to keep this files so the option of ignoring this
lines is not a solution since i want to keep all the lines of the GPR file.
Best,
david
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