I think it's best to discuss this in a new thread.
The easiest way to go around this bug is to define a directory for the
Experiment. Edit Experiment and add a directory.
You will also need to change the field '_allIntensities' to
intesity1\tintensity2. The suport for allIntensities till be added in a
future release.
I have a few follow up questions and comments about plugins...I am trying to get MGH plugins from BASE2 working. Unfortunately I am not having much luck (see ticket http://base.thep.lu.se/ticket/511).
It is fixed
So my questions are:
1) Which plugins have been successfully tested in Base1PluginExecuter (just so
I can rule out it's not me!)?
I've successfully with MergeBioassays,
http://lev.thep.lu.se/trac/baseplugins/wiki/onk.lu.se.MergBioAssay
2) Do you require some help testing Base1PluginExecuter? I am happy to help
here to get this working for the common good and also I have a several custom
plugins I have written in R and perl (and other plugins used in BASE 1.2) that
I would really like to use on the data in BASE. Also I can't really move all my
users of BASE 1.2 across to BASE2 until I get these working, since they use
these as part of their daily analysis.
Yes, we appreciate all help that we can get. Especially testing since it
feels like we never have time to do it as thorough as we would like. As
far as I know all base 1 plugins should work except for those using the
option 'geneAverages'.
3) What are the plans to support non-Java plugins (via development of Base1PluginExecuter or otherwise) given that R and perl are very popular languages in bioinformatics and for arrays most serious
analysis is done using R?
I leave this question open for now. Let me come back on this.
I know you guys have a lot of work on and are doing fantastic job with BASE2, but being able to easily add analysis routines in *any language* and allow users to run them integrated in the web
interface was one of the 'killer' aspects of BASE 1.2...
Kind regards and thanks,
Steve
-------------------------------------------------------------------------
Take Surveys. Earn Cash. Influence the Future of IT
Join SourceForge.net's Techsay panel and you'll get the chance to share your
opinions on IT & business topics through brief surveys-and earn cash
http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV
_______________________________________________
The BASE general discussion mailing list
basedb-users@lists.sourceforge.net
unsubscribe: send a mail with subject "unsubscribe" to
[EMAIL PROTECTED]
