> We are in the process of integrating GenePattern
> (http://www.broad.mit.edu/cancer/software/genepattern/) with BASE  
> 2, and
> once we have a solution working we'll be happy to place it in the  
> public
> domain.
>
> GenePattern supports all the things you are asking for below, and we
> like for the same reasons that you liked BASE1.

Thanks for the tip! GP looks like a neat complement to BASE. We'll be  
sure to give a spin in the coming weeks and get back to you. I guess  
it's a matter of preference whether the users want to integrate GP  
into BASE or vice versa - in our case, it's probably the former, so a  
BASE plugin would suit us just fine... :-)

best,

/Emil


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