Hi Ana, Please check the following things:
- within a batch, all data files must conform to exactly the same format (column headers, data types) - you must have the appropriate permissions for the Experiment you are importing into, the raw data importer configs that are used to import the data, and the batch plugin itself (i.e. the configs and plugin must be shared to you) Cheers Micha ================================== Dr Micha M Bayer Bioinformatics Specialist Genetics Programme The Scottish Crop Research Institute Invergowrie Dundee DD2 5DA Scotland, UK Telephone +44(0)1382 562731 ext. 2309 Fax +44(0)1382 562426 http://www.scri.sari.ac.uk/MichaBayer.htm ============================= > -----Original Message----- > From: [EMAIL PROTECTED] [mailto:basedb-users- > [EMAIL PROTECTED] On Behalf Of Ana Conesa > Sent: 03 April 2007 10:34 > To: BASE ML > Subject: Re: [base] batch importer plugin is available for testing > now_error > > Hi Micha > > This is what I did! and it worked indeed. > The thing that puzzels me is that I have been able to import a number of > arrays in batch with the plugin, but not others (being also the same time > of > raw data file). And even more puzzling is the fact that for one of the > batchs it worked when I was logged as root and not when I was logged as > user > (in other cases the user login worked). So, I don´t really have a clue of > what could be wrong here. > Ana > > On Tue, 3 Apr 2007 09:41:03 +0100, Micha Bayer wrote > > Hi Ana, > > > > Usually this indicates that you don't have a suitable raw data > > import configuration for the data you are trying to import. > > > > The best way to ensure that you do have one that works is to create > > a single new raw bioassay for testing purposes, import one of your > > data files into that, and if that works then the batch import should > > work fine too (but do let me know if it doesn't -- there may be > > another issue lurking in that case). > > > > Cheers > > > > Micha > > > > ================================== > > Dr Micha M Bayer > > Bioinformatics Specialist > > Genetics Programme > > The Scottish Crop Research Institute > > Invergowrie > > Dundee > > DD2 5DA > > Scotland, UK > > Telephone +44(0)1382 562731 ext. 2309 > > Fax +44(0)1382 562426 > > http://www.scri.sari.ac.uk/MichaBayer.htm > > ============================= > > > > > -----Original Message----- > > > From: [EMAIL PROTECTED] [mailto:basedb-users- > > > [EMAIL PROTECTED] On Behalf Of Ana Conesa > > > Sent: 30 March 2007 10:02 > > > To: BASE ML > > > Subject: Re: [base] batch importer plugin is available for testing > > > now_error > > > > > > Hi > > > > > > I have been sucessfully running this plugin but now I am constantly > > > getting this error: > > > Plugin failed: java.lang.Exception: configuration of existing > experiment > > > failed > > > > > > I do not know, the experiment in newly created and I did not define > any > > > configuarion but indicating the Raw data type. I have also no raw data > > > items imported on this user and I even emptied the trash. Any idea of > what > > > I am missing? > > > > > > Ana > > > > > > > > > > > > O @@@@@ Ana Conesa, PhD. > > > @@@ O @@ O @ Centro de Genómica > > > @ O @@@@ O @ Instituto Valenciano de Investigaciones Agrarias > (IVIA) > > > @@@ O @@@@ Carretera Moncada - Naquera, Km. 4,5 > > > @@@@ O @ 46113 Moncada (Valencia) SPAIN > > > || Tel. +34 963424000 ext.70161; Fax. +34 963424001 > > > || email: [EMAIL PROTECTED] > > > > > > > _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > > _ _ _ _ > > > > SCRI, Invergowrie, Dundee, DD2 5DA. > > The Scottish Crop Research Institute is a charitable company limited > > by guarantee. Registered in Scotland No: SC 29367. 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