Greetings! I'm trying to export a basefile using "Run plugin: Bioassay set file exporter". Neither 'normal' nor 'serial' versions succeed.
I navigate to my bioassay set, click export, fill in the parameters[1] and export fails[2] I'm doing this to troubleshoot a problem we're experiencing with a base1 plugin. This plugin needs to operate on a serial basefile but in base2 the plugin fails with this message[3]. I suspected (duh!) that the basefile is not being generated. Thanks for your help! Chad Matsalla [1] Bioassay set Initial bioassayset Fileformat BASEfile Average on reporters false Overwrite false Save as /home/root/temp/basefile.base Export as matrix or serial basefile. true Reporter accession Fields intensity1, intensity2, position, A, log10(ch1 * ch2) / 2, M, log2(ch1 / ch2), Ratio, ch1 / ch2, block, bgPixels [2] net.sf.basedb.core.InvalidDataException: Alias 'A, log10(ch1 * ch2) / 2' has one or more invalid characters. Only a-z, A-Z and 0-9 is allowed. at net.sf.basedb.core.query.Selects.expression(Selects.java:57) at net.sf.basedb.plugins.BioAssaySetExporter.exportBaseFileSerial(BioAssaySetEx porter.java:298) at net.sf.basedb.plugins.BioAssaySetExporter.run(BioAssaySetExporter.java:937) at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java :88) at net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:420) at java.lang.Thread.run(Thread.java:595) [3] java.lang.NullPointerException at net.sf.basedb.plugins.BioAssaySetExporter.exportBaseFileSerial(BioAssaySetEx porter.java:298) at net.sf.basedb.plugins.Base1PluginExecuter.exportData(Base1PluginExecuter.jav a:524) at net.sf.basedb.plugins.Base1PluginExecuter.run(Base1PluginExecuter.java:435) at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java :88) at net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:420) at java.lang.Thread.run(Thread.java:595) ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
