Steve Taylor wrote: I think you have mailed or filed a bug reporter about a similar problem before. See ticket #520: http://base.thep.lu.se/ticket/520
The problem was fixed in 2.2.3 so you need to upgrade your BASE installation to something newer. /Nicklas > Hi, > > I have extended BASE2.2.1 (MySQL Distrib 5.0.27) to accept ScanArray > files (very similar to GenePix) by changing extended-properties.xml > and updating the database. > > The extended-properties.xml the intensity formula I am using is: > > <intensity-formula name="normalised_ratio_of_means" title="Ch1 > Normalised Mean / Ch2 Normalised Mean" description="Ch1 Normalised > Mean / Ch2 Normalised Mean" > <formula channel="1" > expression="raw('ch1NMean')" /> <formula channel="2" > expression="raw('ch2NMean')" /> </intensity-formula> > > I have uploaded some data in 'raw bioassay', but when I try and > create a 'New root bioassay set' I get what looks like a MySQL error. > > > Error: Run plugin: Formula intensity calculator Data truncation: Out > of range value adjusted for column 'ch1' at row 1 > > The stack trace is: > > net.sf.basedb.core.BaseException: Data truncation: Out of range value > adjusted for column 'ch1' at row 1 at > net.sf.basedb.core.SpotBatcher.flush(SpotBatcher.java:161) at > net.sf.basedb.core.AbstractBatcher.close(AbstractBatcher.java:117) at > net.sf.basedb.util.IntensityCalculatorUtil.createRootBioAssaySet(IntensityCalculatorUtil.java:447) > at > net.sf.basedb.plugins.IntensityCalculatorPlugin.run(IntensityCalculatorPlugin.java:256) > at > net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:88) > at > net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:420) > at java.lang.Thread.run(Thread.java:595) Caused by: > java.sql.BatchUpdateException: Data truncation: Out of range value > adjusted for column 'ch1' at row 1 at > com.mysql.jdbc.ServerPreparedStatement.executeBatch(ServerPreparedStatement.java:665) > at > com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeBatch(NewProxyPreparedStatement.java:1723) > at net.sf.basedb.core.SpotBatcher.flush(SpotBatcher.java:155) ... 6 > more > > Can someone explain what this message means and what the Formula > Intensity Calculator is trying to do here? > > Thanks for any help, > > Steve > > ------------------------------------------------------------------------- > This SF.net email is sponsored by DB2 Express Download DB2 Express C > - the FREE version of DB2 express and take control of your XML. No > limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ The BASE general > discussion mailing list basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > [EMAIL PROTECTED] ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]