vegard nygaard wrote: > I am trying out the Tab2Mage importer. When starting it from the "import" > button in an experiment it quickly returns with an error. I am running it as > root on base2.4.3 having added tab2mage importer and Annotation Type and CV > Loader as plug-ins. Input file is the genepix example file found at > http://www.ebi.ac.uk/~oyeniran/pages/download.html. This is output from the > plugin window: > > Name Run plugin: Tab2Mage Importer > Description > Priority 4 (1 = highest, 10 = lowest) > Status Error: IMPORT FAILS: The directory containing the unzipped files > could not be found. You may NOT have sufficient Disk Space > Percent complete > 100%
This is a known issue and has been documented here: http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/README.txt. Please scroll to the usage section right after the installation section. Simply, we recommend not running the importer as the root user. I believe it's advisable to run BASE as an administrator and not the root user as well. In the next release of the importer, a root user will be able to run the importer as well. > In my efforts to solve the problem I wanted to inspect the code but was > unable to find the java files referred in the stack trace. Where can I find > them? In the jar file I found only class files. I downloaded the whole > Nutribase-2.0.2-src.zip, but was unable to unpack the file properly. Are the > source files for the importer inside and if so how do I unpack the zip file? The source file for the importer is available at: http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/src/uk/ ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
