Thanks a lot for your help.
The problem was that I had a tabulation and a space between "assays" and the
assayid in the BASEfile. Because the separator in R was a space by default.
To resolve it, I changed
paste("assays\t",id)
by
paste("assays",id, sep="\t").
Thanks.
----- Message d'origine ----
De : Johan Enell <[EMAIL PROTECTED]>
À : BASE ML <[email protected]>
Envoyé le : Jeudi, 10 Janvier 2008, 14h58mn 13s
Objet : Re: [base] Base1PluginExecuter NumberFormatException: For input string:
Hi Berenice
This comes from your BASEfile. The assay header in the spots section should be
tab separated. It looks like you are using a space instead.
/Johan
On 9 jan 2008, at 17.48, Bérénice WULBRECHT wrote:
Hi,I installed BASE 2.5 and migrate data from my BASE 1. I have bug when I run
Base1PluginExecuter during the data import.This is the stack trace
:java.lang.NumberFormatException: For input string: " 8"at
java.lang.NumberFormatException.forInputString(NumberFormatException.java:48)at
java.lang.Integer.parseInt(Integer.java:447)at
java.lang.Integer.parseInt(Integer.java:497)at
net.sf.basedb.plugins.Base1PluginExecuter.importData(Base1PluginExecuter.java:1393)at
net.sf.basedb.plugins.Base1PluginExecuter.run(Base1PluginExecuter.java:698)at
net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:89)
at
net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:435)at
java.lang.Thread.run(Thread.java:595)It's a problem with bioassayId during the
conversion of the string inan integer.Have you ever had this problem?Thank
you.Berenice Wulbrecht
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