Nice work. I've successfully tested the apt-summarize plug-in. I do not have any genotype data so I have to leave that for someone else to test.
I miss a short description of the two plug-ins. How to use them and what to expect from them. Specifically the genotyoe plug-in requires some additional files (or one file). Is the chrx file alwasy the same for a given .cdf (array design in BASE speak)? If yes, maybe we should extend array design to also store the chrx file for seamless use. Also, should there be more than one Affy raw data type, one for expression and another for snp? Jim Collet made an inquiry about support for 'apt-cel-extract' to the mailing list in the beginning of this year. How do we proceed to get this algorithm (and others) into the APT plug-in set? Cheers, Jari Robin Andersson skrev: > Hi all, > > A plugin package for execution of the Affymetrix Power Tools > apt-probeset-summarize and apt-probeset-geneotype are available for > download from: > http://madr.lcb.uu.se/browser/plugins/se/uu/lcb/APT/tags/0.2 > > From this repository you can download a precompiled jar file or the > source code. See the INSTALL file for instructions. This package is a > suggested replacement of the affymetrix package including the Plier and > RMAExpress plugins. > > Robin ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
