Matthew Lange wrote:
> Hi Basedbers,
> 
> It is my understanding from the documentation at
> http://base.thep.lu.se/chrome/site/latest/html/appendix/appendix.coreplugins
> .html
> 
>  there is no need to configure the JEP extra value plugin for the bioassay
> set.  Yet when I try to make a new root bioassay set, I get:

It is correct that the JEP plug-in doesn't require any configurations, 
but that plug-in is not used to create root bioassaysets. It is the 
Intensity calculator plug-in. This plug-in also doesn't require any 
configurations.

> 
> No usable plugins found
> No plugins can be used in this context, for the following reasons:
> Could not find any plugins that you have permission to use
> 
> What is going on, what do I need to do to get some kind of basic analysis
> view of my data?

The Intensity calculator plug-in is normally shared to everyone. But it 
can't be used with Affymetrix data. You can find plug-ins for Affymetrix 
on http://baseplugins.thep.lu.se/wiki/PluginDownload

If you don't have Affymetrix data, you should provide more information, 
such as which BASE version you are running, what kind of data you have, 
and possible a recipe for reproducing the problem.

/Nicklas


> I have admin privs on my base server, and when I look at plugin
> configurations I have removed all filters and made everything visible to me.
> 
> Please help.
> 
> matthew
> 
> 
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