Hi Jan, Can I just clarify what exactly you mean here:
1. You have a single raw bioassay object and you want to load the data into this Or 2. you have multiple raw bioassays and want to load data into all of them in one go In the first case, there are core plugins shipped with BASE by default that do this -- check the docu at http://base.thep.lu.se/chrome/site/latest/html/userdoc/analysis/experime nts_analysis.rawbioassay.html#experiments_analysis.rawbioassay.rawdata In the second case, there are third party batch importer plugins available from the BASE plugins website that do support Agilent data but see these recent threads about their current state: http://www.mail-archive.com/basedb-users@lists.sourceforge.net/msg01487. html and http://www.mail-archive.com/basedb-users@lists.sourceforge.net/msg01467. html cheers Micha ================================== Dr Micha M Bayer Bioinformatics Specialist Genetics Programme The Scottish Crop Research Institute Invergowrie Dundee DD2 5DA Scotland, UK Telephone +44(0)1382 562731 ext. 2309 Fax +44(0)1382 562426 http://www.scri.ac.uk/staff/michabayer ================================== > -----Original Message----- > From: [EMAIL PROTECTED] [mailto:basedb-users- > [EMAIL PROTECTED] On Behalf Of Jan Torleif Pedersen > Sent: 15 August 2008 14:51 > To: BASE ML > Subject: Re: [base] Import of Agilent data > > Just an update on this, what I really need is a plugin for loading > Agilent Raw Data within a bioassay. I wonder if anyone has used the > Illumina Raw Data importer for this with success ? > > Regards -- Jan > > > ________________________________ > > From: [EMAIL PROTECTED] [mailto:basedb- > [EMAIL PROTECTED] On Behalf Of Jan Torleif Pedersen > Sent: Thursday, August 14, 2008 2:35 PM > To: BASE ML > Subject: [base] Import of Agilent data > > > > Greetings, > > I have some data generated on the Agilent system. I also have the > data from the Agilent feature extraction system - does anybody have a > plugin for loading this type of data ? > > Many regards -- Jan > _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ SCRI, Invergowrie, Dundee, DD2 5DA. The Scottish Crop Research Institute is a charitable company limited by guarantee. Registered in Scotland No: SC 29367. Recognised by the Inland Revenue as a Scottish Charity No: SC 006662. DISCLAIMER: This email is from the Scottish Crop Research Institute, but the views expressed by the sender are not necessarily the views of SCRI and its subsidiaries. This email and any files transmitted with it are confidential to the intended recipient at the e-mail address to which it has been addressed. It may not be disclosed or used by any other than that addressee. If you are not the intended recipient you are requested to preserve this confidentiality and you must not use, disclose, copy, print or rely on this e-mail in any way. Please notify [EMAIL PROTECTED] quoting the name of the sender and delete the email from your system. Although SCRI has taken reasonable precautions to ensure no viruses are present in this email, neither the Institute nor the sender accepts any responsibility for any viruses, and it is your responsibility to scan the email and the attachments (if any). ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
