Hi
We have some raw bioassays in an experiment and I am trying to work out how to
use the analysis plugins.
We can run the Formula intensity calculator Mean FG - Mean BG to create a
BioAssay set.
We can run the Filter plugin to filter out flagged values and the JEP intensity
transformer to set values.
However, what I would like to do is if a spot is flagged (non 0), set its value
to the mean
of that spots reporters (flagged 0) across the whole experiment. Calculate a
mean of the channel 1 and channel2 values
for each reporter for non flagged reporters.
Is that possible? I have been looking at the
JEP extra value calculator plugin but I am not sure how I can create such a
mean using that plugin
regards
Louise
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