Yannick Lippi wrote: > Hi Jari and Nicklas, > Thanks for your answers about BASE! > I have others questions... > > __FIRST QUESTION: Pb for installing "Normalization plug-ins" package > > I followed instructions from the "install" file > (http://baseplugins.thep.lu.se/browser/plugins/base2/net.sf.basedb.normalizers/trunk/INSTALL) > - I have put the .jar file into the <plugins> dir on BASE > - In the "install" file is said: > "" 3. Log in to BASE as an administrator and run the plug-in > auto-installation wizard by going to Administrate -> Plugins -> Definitions > and click on the 'New' button. > "" 4. Select the 'Automatically' option. > - But I do not have the 'Automatically' option when creating 'New". > Instead i have: > > "Name New plugin > "Class > "Path > "Max memory (Use KB, MB or GB to specify units) > "Trusted no yes > "Allow immediate exection no yes auto > > What's wrong? Why that can't be done as listed in "Install" file? I > recently apgraded to version 2.11.0. Maybe a BASE 2 version problem? >
Are you sure that your base.config has been configured with the correct path to the plug-in directory? It is the plugins.dir setting. If this hasn't been setup correctly can only use the manual installation. If you change the settings the web server needs to be restarted. > __3RD QUESTION: Calculate ratios between sames chanels of 2 assays > Since, for each assay i have a pool of RNA labelled with Cy5(as control > for normalization between arrays), and conditions treatments labelled with > cy3, can i create an new column expression which calculates ratio of > ch(1)assay1/ch(1)assay2, and an other one for ch(2)? No, it is not possible. The standard functionality found in BASE and in core plug-ins shipped with BASE can only work on a single bioassay at a time. If you need to do things that needs data from different bioassays it must be done with plug-ins that knows how to do this. /Nicklas ------------------------------------------------------------------------------ Crystal Reports - New Free Runtime and 30 Day Trial Check out the new simplified licensign option that enables unlimited royalty-free distribution of the report engine for externally facing server and web deployment. http://p.sf.net/sfu/businessobjects _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to basedb-users-requ...@lists.sourceforge.net
