Hi, Likewise! I too have hacked this plugin to make it work with version 2.9, and I have a version here that works for me and that we do use to export and submit stuff to ArrayExpress. I have also fixed a problem that prevented two-color experiments from being exported correctly. People are welcome to a copy of my code if they like.
Between this and the batch imports now implemented in the BASE core we have something that closely resembles a production system and actually allows us to do what we need to do (although we use it fairly infrequently now). The official version of this plugin was developed at the EBI by Dominic Oyeniran under the supervision of Philippe Rocca-Serra, and from my last conversation with Philippe I recall that the plugin is now essentially unsupported/orphaned because Dominic has left and there has been on replacement for him. Cheers Micha ================================== Dr Micha M Bayer Bioinformatics Specialist Genetics Programme The Scottish Crop Research Institute Invergowrie Dundee DD2 5DA Scotland, UK Telephone +44(0)1382 562731 ext. 2309 Fax +44(0)1382 562426 http://www.scri.ac.uk/staff/michabayer ================================== > -----Original Message----- > From: Pawel Sztromwasser [mailto:pawel.sztromwas...@bccs.uib.no] > Sent: 28 April 2009 11:56 > To: BASE ML > Subject: Re: [base] Tab2Mage export > > Hi, > > I am also curious how development of ArrayExpress export is going? We > would be very interested in having this plugin working with latest > BASE2. We are exporting data to AE quite often and would have a great > use of it. > I even hacked existing plugin a little bit to get at least part of the > work done automatically, but it is more like to just make it work with > changes after BASE2.5, not to make it 'releaseable'. > > All the best, > Pawel > > Jari Häkkinen wrote: > > Hi, > > > > It is a while since Paulo asked the below question. I have added a > > ticket on this to the plug-in dev site, > > http://baseplugins.thep.lu.se/ticket/209 > > > > This means that we are going to look into creating a submission tool. > It > > will probably target GEO submission since there are work done on > > ArrayExpress submission elsewhere. > > > > Can someone comment on the ArrayExpress progress? > > > > > > Cheers, > > > > Jari > > > > > > Paulo Almeida wrote: > >> Hi, > >> > >> Does anyone have news on the plug-in that was being developed to > export data > >> in a format that is compatible with the ArrayExpress database? I > know it has > >> been asked before (by myself even), but I would like to have > information on > >> whether it is still planned, or will be released in the future, in > order to > >> make decisions about my system. > >> > >> Thanks, > >> Paulo Almeida > >> Instituto Gulbenkian de Ciência > >> > >> -------------------------------------------------------------------- > ---------- > >> Apps built with the Adobe(R) Flex(R) framework and Flex Builder(TM) > are > >> powering Web 2.0 with engaging, cross-platform capabilities. 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