Olivier Lefevre wrote:
> I am not having much luck installing that plugin. It wants you to
> run updatedb.sh. When I do that it says "Building database", which
> is alarming in and of itself since that suggests it is rebuilding
> the db from scratch, which begs the question of whether it is
> possible to install that plugin on a "live", already populated
> base instance: I don't want it to throw out all the existing data.

It is safe to run the updatedb script. It will add Illumina-specific
tables and columns to the database. It will not destroy anything already
in it.

> But that's not the worst of of it. It immediately complains of
> "APPARENT DEADLOCK!!!" (twice) and also (many times) of "Access
> denied for user 'base2user'@'localhost' (using password: YES)",
> which is baffling since I supplied the correct uid and pwd at
> the command line when starting the script. Finally it gives up.

The database user and password is configured in the base.config file
and if you already have your BASE server up and running it should work.
The error message you are getting indicates that the configuration
in base.config is incorrect.

The password and (optional) username that you can give to updatedb is
the usernaname and password of root account in your base installation.
Everything should be described in the BASE manual. See 
http://base.thep.lu.se/chrome/site/latest/html/admindoc/installation_upgrade/installation_upgrade.upgrade.html
for more information.

/Nicklas

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